Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N19
         (825 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   7.5  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    26   7.5  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   9.9  

>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 9/29 (31%), Positives = 19/29 (65%)
 Frame = -3

Query: 634 IVKCIFLNKYLVMYTYYFDDFIFNSKFAI 548
           +++   L  YL+ +T +F +F+F+S  A+
Sbjct: 180 LLRVSLLQLYLISWTIHFINFVFHSLLAV 208


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/44 (27%), Positives = 25/44 (56%)
 Frame = -3

Query: 643  EYRIVKCIFLNKYLVMYTYYFDDFIFNSKFAI*NILLLYLSKNI 512
            ++R +K    +    +Y+YYF+D+    +  I + L ++LS N+
Sbjct: 1805 KFRSIKDFLKHTVSYLYSYYFEDY----ELEIVSTLTMFLSNNL 1844


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = -1

Query: 591  HTILMILFLIQSLQFRTFCFYIYLKIYYPLFNFNQCYLLFKHL 463
            + IL IL L+ S +   F + + +K+     N++ C+   +HL
Sbjct: 1026 YAILNILNLLTSNECDEFDYSVLMKVVGVFANYSDCFQRNRHL 1068


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,262
Number of Sequences: 5004
Number of extensions: 53017
Number of successful extensions: 94
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 404442380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)