Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N18
         (589 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    26   4.7  
SPAC25B8.09 |||trans-aconitate 3-methyltransferase |Schizosaccha...    26   4.7  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    26   4.7  
SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter ...    26   4.7  
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   6.2  
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch...    25   8.2  
SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomy...    25   8.2  

>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 80  YGVRLPSHSYSSAVSIKLDNPVA 12
           +G  LP+H  SS V+  LDN V+
Sbjct: 156 HGFSLPTHEQSSPVAESLDNSVS 178


>SPAC25B8.09 |||trans-aconitate 3-methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/47 (27%), Positives = 26/47 (55%)
 Frame = -3

Query: 449 PEYLRACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLL 309
           P+Y     E +N+E+  +ET+ ++ L A   +L T  I+ +  K ++
Sbjct: 18  PDYPPQITEWLNDEFSVNETSTILELGAGSGKL-TPRIIASQPKEII 63


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 23/96 (23%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
 Frame = -3

Query: 461 LHKHPEYLRACCEMINEEWPRSETARMMSLQASCNELPTSLI--LVANTKSLLGHC---- 300
           L  HP+YL     ++ +    SET+  M++  S + L T+    L+      +       
Sbjct: 542 LQNHPQYLNISLPVLFDALHISETSIQMTVSRSIHTLCTTCASHLLTEIDGFMAVVEELT 601

Query: 299 -KLTAIPSIPESCFVETVVISRAMRGKKLG-TYLMR 198
            KL  +PS+ E  +     +++ +   +L  +YLMR
Sbjct: 602 PKLVYVPSVLEKIYSSVGYVTQRIEDIELRISYLMR 637


>SPCC61.01c |str2|str1, SPCC622.20c|siderophore-iron transporter
           Str2 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 597

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 344 SLILVANTKSLLGHCKLTAIPSIP 273
           S +++A+T SLL    L+AIP +P
Sbjct: 175 SQLIIADTSSLLNRGILSAIPELP 198


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = +3

Query: 66  QSYTVYRNRCTNFVSQLHVEVFLSFRRQIN 155
           Q+ TV R+ C N  + + VE+F+S  +  N
Sbjct: 519 QTCTVTRSGCANIATAIAVELFVSLLQHPN 548


>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
           Slh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1935

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 KLVGSSLQDACKDIILAVSLRGHSSFI 420
           K+V S++ +AC D +L +   GH   I
Sbjct: 503 KIVNSNIDEACFDKVLKLIQEGHQVMI 529


>SPCC74.09 |mug24||RNA-binding protein, rrm type|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 654

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +2

Query: 503 KQIIVAYCNSQDSFFFY 553
           ++II+ + +S D+FFFY
Sbjct: 243 RRIIITFLDSADAFFFY 259


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,312,142
Number of Sequences: 5004
Number of extensions: 46495
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)