Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_N18
(589 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250 36 0.032
02_05_0531 + 29811356-29811856 35 0.055
09_04_0318 - 16620177-16620582,16620686-16620765,16620873-166212... 32 0.39
02_01_0252 - 1657268-1657692,1657727-1658445,1658761-1659089,165... 32 0.39
08_02_1195 - 25149891-25151402,25152194-25152493 31 0.90
08_02_0940 - 22822391-22822781,22822875-22823053,22823079-228234... 29 2.1
05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637 28 4.8
01_06_0338 + 28538951-28538966,28539073-28539183,28539311-285394... 28 4.8
04_04_0423 - 25102305-25102489,25102571-25102717,25103079-251031... 27 8.4
>09_04_0575 - 18654887-18655047,18656182-18656242,18656777-18657250
Length = 231
Score = 35.5 bits (78), Expect = 0.032
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = -3
Query: 260 VETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQENFYVKLGY 105
VE VV+ A RG+ LG ++RR+ E+ + K+I T FY K G+
Sbjct: 103 VEDVVVDAAARGRGLGERVVRRLVEHARGRGCYKVIINCTPELTGFYAKCGF 154
>02_05_0531 + 29811356-29811856
Length = 166
Score = 34.7 bits (76), Expect = 0.055
Identities = 19/52 (36%), Positives = 27/52 (51%)
Frame = -3
Query: 260 VETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQENFYVKLGY 105
VE VV+ A RG+ LG ++RR+ E K K+I T +Y K G+
Sbjct: 104 VEDVVVDAAARGRGLGLRVVRRLVEIAKEAGCYKVILDCTPELRAYYAKCGF 155
>09_04_0318 -
16620177-16620582,16620686-16620765,16620873-16621213,
16621298-16621559
Length = 362
Score = 31.9 bits (69), Expect = 0.39
Identities = 20/58 (34%), Positives = 28/58 (48%)
Frame = -3
Query: 446 EYLRACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLLGHCKLTAIPSIP 273
EYL+ CCE + EE R + + L+A P + L A T S+ C+ A S P
Sbjct: 239 EYLKRCCETLTEENRRLQ-KELAELRALKTVHPFYMHLPATTLSMCPSCERVASNSAP 295
>02_01_0252 -
1657268-1657692,1657727-1658445,1658761-1659089,
1659223-1659375,1659430-1659561,1659748-1659852,
1660020-1660193,1660283-1660352,1660458-1660639,
1660738-1660847,1660948-1661052,1661153-1661231,
1662128-1662168,1662283-1662358,1662455-1662589
Length = 944
Score = 31.9 bits (69), Expect = 0.39
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +1
Query: 322 VFATKIKLVGSSLQDACKDIILAVSLRGHSSFIISQHALKYSGCLCNGNTLRPS 483
V + K S++ AC+ ++ SL +F+I+ + +G +CN N L P+
Sbjct: 253 VLSRKTPRSDKSIRAACRYFLIECSLAFIVAFLINVSVVVVAGSICNANNLSPA 306
>08_02_1195 - 25149891-25151402,25152194-25152493
Length = 603
Score = 30.7 bits (66), Expect = 0.90
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -3
Query: 392 TARMMSLQASCNELPTSLILVANTKSLLGHCKLTA 288
T +++SL+ C+EL +L +TK+++ H K +A
Sbjct: 323 TTKLVSLEGYCSELKKALKQATSTKNMISHSKRSA 357
>08_02_0940 -
22822391-22822781,22822875-22823053,22823079-22823428,
22823522-22823765
Length = 387
Score = 29.5 bits (63), Expect = 2.1
Identities = 18/53 (33%), Positives = 25/53 (47%)
Frame = -3
Query: 446 EYLRACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLLGHCKLTA 288
EYL+ CCE + EE R + L+A P + L A T S+ C+ A
Sbjct: 269 EYLKRCCETLTEE-NRRLHKELAELRALKTARPFYMHLPATTLSMCPSCERVA 320
>05_03_0664 - 16762121-16762637,16762704-16763331,16763418-16763637
Length = 454
Score = 28.3 bits (60), Expect = 4.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 428 CEMINEEWPRSETARMMSLQASCNELPTSLILVAN 324
C++ + W R E AR + +A C +P L A+
Sbjct: 101 CDVFSGRWVRDEAARPLYREADCPYIPAQLACEAH 135
>01_06_0338 +
28538951-28538966,28539073-28539183,28539311-28539479,
28540841-28541063,28541148-28541204,28541718-28541861,
28541939-28542019,28543026-28543113,28543579-28543943,
28544011-28544086,28544174-28544367,28544846-28545009,
28545080-28545152,28545237-28545350,28545839-28545919,
28546043-28546102,28546180-28546289,28546325-28546501,
28546599-28546683
Length = 795
Score = 28.3 bits (60), Expect = 4.8
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -3
Query: 128 NFYVKLGYKVCAPISIYGVRLPSHSYSSAVSIKLDNPVAI 9
+F + + VC P S++ L HS +AVS+ L+ I
Sbjct: 88 DFLIAIAEPVCRPESMHEYNLTPHSLYAAVSVGLETSTII 127
>04_04_0423 -
25102305-25102489,25102571-25102717,25103079-25103150,
25103305-25103327,25103792-25103863,25104064-25104112,
25104344-25104415,25104880-25104951,25105281-25105352,
25106569-25106640,25106810-25106881,25106974-25107048,
25107324-25107470,25107598-25107805,25108361-25108489,
25108563-25108769
Length = 557
Score = 27.5 bits (58), Expect = 8.4
Identities = 14/40 (35%), Positives = 25/40 (62%)
Frame = -3
Query: 254 TVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKG 135
T+ + + KKLGT+ R E++ S +L M++LS++G
Sbjct: 387 TISLMQTSETKKLGTFRHRSWEQWTSS--SLWMVFLSSQG 424
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,066,055
Number of Sequences: 37544
Number of extensions: 263623
Number of successful extensions: 595
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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