Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N18
         (589 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23177-9|AAA64327.1|  217|Caenorhabditis elegans Hypothetical pr...    84   6e-17
Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    33   0.11 
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    33   0.11 
U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   5.7  
U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>U23177-9|AAA64327.1|  217|Caenorhabditis elegans Hypothetical
           protein C56G2.15 protein.
          Length = 217

 Score = 84.2 bits (199), Expect = 6e-17
 Identities = 43/127 (33%), Positives = 71/127 (55%), Gaps = 2/127 (1%)
 Frame = -3

Query: 461 LHKHPEYLRACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKS--LLGHCKLTA 288
           L+   + L+     +N EWPRS+ +R  S + SC + P    L+ N ++  +LGH ++T 
Sbjct: 9   LYDRQDLLKESMTFLNSEWPRSDGSREHSQKKSCRQSPPMSFLLLNKENDEILGHSRITH 68

Query: 287 IPSIPESCFVETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQENFYVKLG 108
           +P+   + ++E+V+I +  RG  LG +LM+  E++  +       YLST  Q  FY  LG
Sbjct: 69  LPNRDHALWIESVMIKKDQRGLGLGKFLMKSTEKW-MTEKGFNEAYLSTDDQCRFYESLG 127

Query: 107 YKVCAPI 87
           Y+ C PI
Sbjct: 128 YEKCDPI 134


>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 260 VETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQENFYVKLGY 105
           VE VV+   MRGKKLG  L   + E  K++   K+          FY K GY
Sbjct: 100 VEDVVVDEKMRGKKLGALLNEVLVEMAKTIGVYKLSLECKTELIPFYNKFGY 151



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 260 VETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQ-ENFYVKLGY 105
           VE VV+   MRGK+LG  +   + +  +S L +  + L  K +   FY K GY
Sbjct: 276 VEDVVVDLTMRGKRLGILINEALVKMARS-LGVYKLSLECKTELIPFYNKFGY 327


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 20/52 (38%), Positives = 25/52 (48%)
 Frame = -3

Query: 260 VETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQENFYVKLGY 105
           VE VV+   MRGKKLG  L   + E  K++   K+          FY K GY
Sbjct: 100 VEDVVVDEKMRGKKLGALLNEVLVEMAKTIGVYKLSLECKTELIPFYNKFGY 151



 Score = 29.5 bits (63), Expect = 1.9
 Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = -3

Query: 260 VETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTKGQ-ENFYVKLGY 105
           VE VV+   MRGK+LG  +   + +  +S L +  + L  K +   FY K GY
Sbjct: 276 VEDVVVDLTMRGKRLGILINEALVKMARS-LGVYKLSLECKTELIPFYNKFGY 327


>U41022-2|AAA82339.2|  373|Caenorhabditis elegans Hypothetical
           protein K08B5.1 protein.
          Length = 373

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 16/43 (37%), Positives = 24/43 (55%)
 Frame = -3

Query: 170 LNLKMIYLSTKGQENFYVKLGYKVCAPISIYGVRLPSHSYSSA 42
           L L +I LS+K +ENF +     +C P+ I+     S S SS+
Sbjct: 305 LVLVLITLSSKLRENFLLVSNLSICFPVKIHTTDSRSSSESSS 347


>Z93386-3|CAB07648.1|  230|Caenorhabditis elegans Hypothetical
           protein R11H6.4 protein.
          Length = 230

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 122 RSFLVLSSTNKSFSNLKRFYNI 187
           R F  LSS N SFS L RFY+I
Sbjct: 69  RFFFFLSSPNTSFSVLFRFYSI 90


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 10/47 (21%), Positives = 25/47 (53%)
 Frame = -3

Query: 278 IPESCFVETVVISRAMRGKKLGTYLMRRVEEYCKSVLNLKMIYLSTK 138
           + ++CF     ++  +    +G Y++ R E+ C  +L  +++Y  T+
Sbjct: 856 LSKNCFKYVFRVAFLLFNDSIGEYILGRKEKLCYEMLASRLVYFYTR 902


>U61958-2|AAB03182.3| 1067|Caenorhabditis elegans Hypothetical
           protein C25A8.4 protein.
          Length = 1067

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 26/98 (26%), Positives = 43/98 (43%)
 Frame = -3

Query: 467 LPLHKHPEYLRACCEMINEEWPRSETARMMSLQASCNELPTSLILVANTKSLLGHCKLTA 288
           LP   HP  LRA   M N+   +     ++S       LP+ L+L + + S L    L  
Sbjct: 556 LPFTGHPSPLRATSSMTNQ---KMSWESLLSHWVEKRVLPSKLVL-SLSASTLSMQSLAD 611

Query: 287 IPSIPESCFVETVVISRAMRGKKLGTYLMRRVEEYCKS 174
           + S   + F ++  +S  +R KK   +  + + E  KS
Sbjct: 612 VRSSAATPFGQSAFVS-MLRSKKGDIHSQQEICESLKS 648


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,809,858
Number of Sequences: 27780
Number of extensions: 259756
Number of successful extensions: 587
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 585
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1237082886
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)