Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N18
         (589 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    25   0.55 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    23   2.2  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.9  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    21   9.0  

>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 25.0 bits (52), Expect = 0.55
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +1

Query: 403 GHSSFIISQHALKYSGCLCNGNTLRP-SGSIFKGQTNNCCIL 525
           GH S  + QH    +   C+G+T+R  +G   K   + C +L
Sbjct: 274 GHGSPPVKQHRSSSASTTCSGHTVRCFTGGPRKSHESQCPML 315


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/35 (28%), Positives = 19/35 (54%)
 Frame = +3

Query: 30  FNTDSRTVTMARQSYTVYRNRCTNFVSQLHVEVFL 134
           FN ++R+V    +        C N++S+L V++ L
Sbjct: 157 FNANARSVVEKMRKENGKEFDCHNYMSELTVDILL 191


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 221 KLGTYLMRRVEEYCKSVLNLKMIYLS 144
           K G Y   R +  C S+L +K+ Y+S
Sbjct: 165 KKGVYFAFRDQGACISILAIKVYYIS 190


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +2

Query: 407 TLRLSFHSMLSNTQDVCA 460
           T+RLS HS+L + Q V A
Sbjct: 933 TIRLSGHSVLHSAQSVVA 950


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.0 bits (42), Expect = 9.0
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +3

Query: 69  SYTVYRNRCTNFVSQLHVEVFLSFRRQI 152
           S T+YRN+   + +++H  +      Q+
Sbjct: 95  SVTLYRNKTVKYSARMHAIIACQMEFQL 122


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,563
Number of Sequences: 438
Number of extensions: 2813
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17115420
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)