Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N17
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...   294   1e-80
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    28   1.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   3.9  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   5.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   5.1  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score =  294 bits (721), Expect = 1e-80
 Identities = 142/199 (71%), Positives = 164/199 (82%)
 Frame = -3

Query: 711 AVNNISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLG 532
           A   ISKKRKFV DGVF AELNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLG
Sbjct: 3   AAFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLG 62

Query: 531 EKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRACY 352
           EKGRRIRELT++VQKRF   E +VELYAEKV  RGLCA+AQ ESLRYKL+ GLAVRRA Y
Sbjct: 63  EKGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAY 122

Query: 351 GVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLRQG 172
           GVLR++ME+GA+GCEVV+SGKLR  RAKSMKF DG MIHSG P  D++++ATRHVLLRQG
Sbjct: 123 GVLRYVMEAGAKGCEVVISGKLRAARAKSMKFADGFMIHSGQPAVDFIDSATRHVLLRQG 182

Query: 171 VLGIQGQXHVAVGPARQER 115
           VLG++ +  +     RQ++
Sbjct: 183 VLGVKVKIMLPEPKTRQKK 201


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -3

Query: 345  LRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRH 190
            + F ME   +  + ++  +L+     S K  D ++I  GD  ND + T+ RH
Sbjct: 1868 IHFAMEFLHKNTKSLLDSELKDGNYISAKGKDVIVIGGGDTGNDCLGTSVRH 1919


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 561 MATRTQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAI-AQAESLRYKL 385
           MATR Q       RR  E  + +QK +N  + ++EL  E+V   G   +  + +  RY +
Sbjct: 726 MATRIQRAWRSYVRRRSEAAACIQKLWNRNKVNMEL--ERVRNEGTKLLQGKKQRRRYSI 783

Query: 384 IG 379
           +G
Sbjct: 784 LG 785


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 202 CYQTCASQTRSTRNTRSKXCCRGTSKART--ARR 107
           C + C       R+  +K CC G SKA+T  ARR
Sbjct: 531 CERLCTILLSCGRHQCNKKCCSGYSKAQTRLARR 564


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = -1

Query: 104 PQPDHRLVTEPKDEPVPLEPTSEVRARAPAPMP 6
           P P   +V  P   P+P+ P + +    P P P
Sbjct: 734 PPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,957,414
Number of Sequences: 5004
Number of extensions: 60353
Number of successful extensions: 151
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 151
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)