Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N17
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   306   1e-83
Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical pr...    30   2.1  
Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical pr...    30   2.1  
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical...    29   2.7  
Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    29   4.8  

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  306 bits (751), Expect = 1e-83
 Identities = 150/205 (73%), Positives = 171/205 (83%), Gaps = 1/205 (0%)
 Frame = -3

Query: 714 MAVN-NISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSV 538
           MA N N++KK+K V  G+FKAELN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+V
Sbjct: 1   MAANQNVTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNV 60

Query: 537 LGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLIGGLAVRRA 358
           LGE+GRRI+ELTSVVQKRF   E SVELYAEKV+ RGLCA+AQ ESLRYKL+GGLAVRRA
Sbjct: 61  LGERGRRIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYKLVGGLAVRRA 120

Query: 357 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHSGDPCNDYVNTATRHVLLR 178
           CYGVLRFIMESGA+G EV+VSGKLRGQRAK+MKFVDGLMIHSG P NDY+  A RHV LR
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHSGHPVNDYIQQAVRHVQLR 180

Query: 177 QGVLGIQGQXHVAVGPARQERPEEA 103
           QGV+GI+ +  +   P  Q  P  A
Sbjct: 181 QGVIGIKVKIMLPYDPRGQNGPRNA 205



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 21/41 (51%), Positives = 30/41 (73%)
 Frame = -1

Query: 158 KVKXMLPWDQQGKNGPKKPQPDHRLVTEPKDEPVPLEPTSE 36
           KVK MLP+D +G+NGP+   PDH  + EP++E +P EP S+
Sbjct: 187 KVKIMLPYDPRGQNGPRNALPDHVQIVEPQEEVLPKEPHSQ 227


>Z48178-3|CAC42246.1| 1553|Caenorhabditis elegans Hypothetical
           protein C05C10.2b protein.
          Length = 1553

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 723 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 610
           +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>Z48178-2|CAA88201.1| 1551|Caenorhabditis elegans Hypothetical
           protein C05C10.2a protein.
          Length = 1551

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = -3

Query: 723 VAIMAVNNISKKRKFVGDGVFKAELNEFLTRELAEDGY 610
           +A     +I KK  F GDG F     E    E+ +DGY
Sbjct: 885 IAARLSRDIPKKFSFKGDGEFFVSQREVFENEILDDGY 922


>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
           protein Y18D10A.1 protein.
          Length = 1634

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 13/40 (32%), Positives = 25/40 (62%)
 Frame = -3

Query: 549 TQSVLGEKGRRIRELTSVVQKRFNIPEQSVELYAEKVATR 430
           + S+ G+KG+ +REL + + K  ++ E++  + AE  A R
Sbjct: 396 SSSIHGKKGKTVRELQTEMMKGESVKEKAARMRAEASAGR 435


>AF078157-17|AAG24072.1| 1062|Caenorhabditis elegans Hypothetical
            protein F25E5.1 protein.
          Length = 1062

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 119  NGPKKPQPDHRLVTEPKDEPVPLEPTSEVRARAPAPMPQ 3
            NGPKK +    L+T P  E V  E   +   ++P+P P+
Sbjct: 998  NGPKKSKNQMMLITFPSREIVEEEEPPQEAEQSPSPDPE 1036


>Z34802-8|CAH10787.1|  704|Caenorhabditis elegans Hypothetical
           protein M88.5b protein.
          Length = 704

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 627 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 466
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 543 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 596


>Z34802-7|CAA84338.2|  828|Caenorhabditis elegans Hypothetical
           protein M88.5a protein.
          Length = 828

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = -3

Query: 627 LAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRFNIPEQ 466
           L   G  G    +  IR+E+ +       ++G+ G+ +REL  +      IPE+
Sbjct: 667 LPSSGMDGDRSHMLRIRTEVSVPTRIIGRIIGKGGQNVRELQRITGAVVKIPEE 720


>Z31590-7|CAA83463.1|  361|Caenorhabditis elegans Hypothetical
           protein R01H10.6 protein.
          Length = 361

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/59 (30%), Positives = 30/59 (50%)
 Frame = +1

Query: 214 IITRVSRVDHESIYKLH*FGTLTTQLARYNNFTTTGTRFHDETENTIASTTYSETSDKL 390
           ++TR   + +E+IY L      TT+      FTTT    H +  NTI+S + +  + K+
Sbjct: 89  LVTRNRGISNEAIYVLAKVSATTTKFEFI--FTTTNPASHSKLFNTISSISRAYETTKM 145


>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 22/69 (31%), Positives = 31/69 (44%)
 Frame = -1

Query: 251 MDS*STLETLVMITSTLLPDMCFSDKEY*EYKVKXMLPWDQQGKNGPKKPQPDHRLVTEP 72
           M S S+L T   IT  +    CF       ++V+      Q+ K   +KPQP+ R+  E 
Sbjct: 64  MSSISSLNTATKITPHISSSSCFLPSF--SHQVEENF---QKRKIFNEKPQPEKRICMEN 118

Query: 71  KDEPVPLEP 45
              PVP  P
Sbjct: 119 MSHPVPSIP 127


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,737,917
Number of Sequences: 27780
Number of extensions: 361823
Number of successful extensions: 1478
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)