Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N16
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.03 |pmd1||leptomycin efflux transporter Pmd1|Schizosacch...    33   0.045
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    30   0.42 
SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    27   2.9  
SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|c...    27   2.9  
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ...    27   3.9  
SPBC25H2.15 |||programmed cell death protein homolog|Schizosacch...    26   6.8  
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz...    25   9.0  

>SPCC663.03 |pmd1||leptomycin efflux transporter
           Pmd1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1362

 Score = 33.1 bits (72), Expect = 0.045
 Identities = 15/59 (25%), Positives = 30/59 (50%)
 Frame = -3

Query: 585 RRKKRNRLNQYLVNSVIACWYLLSFWSNFVHDEILCEGVLSWSKI*DFFPTNLAFFVKF 409
           ++ K+++ N + +NS+ A W++ SF    +    L  G+L+       +P   A F +F
Sbjct: 761 KKSKKSKKNNHEINSLTALWFIHSFVRTMIEIICLLIGILASMICGAAYPVQAAVFARF 819


>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 17/46 (36%), Positives = 23/46 (50%)
 Frame = -3

Query: 483 LCEGVLSWSKI*DFFPTNLAFFVKFSL*NDA*QSSNIFYLE*DLPT 346
           L + VL+W  I  FFP  L      S+ N +  S N  + E D+PT
Sbjct: 563 LADAVLNWQSILSFFPA-LRIMRFLSITNKSLSSDNSAFTENDIPT 607


>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +3

Query: 234 KSVKKGRGIMEDESKPKKKTNSIKSQSYADSSLTIAVL 347
           K +KK   ++ED   P+  +N +K QS+A    T+  L
Sbjct: 19  KLLKKRDALIEDLKSPEGASNLLKLQSFAKFESTVDAL 56


>SPAC26F1.13c |||leucine-tRNA ligase |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1111

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 234  KSVKKGRGIMEDESKPKKKT 293
            K  KKG+G++ D SKPK+ T
Sbjct: 942  KRQKKGKGMLFDPSKPKRLT 961


>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
           Ste6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 23/78 (29%), Positives = 32/78 (41%), Gaps = 2/78 (2%)
 Frame = +3

Query: 465 IIRLRKGSH--RERSLTKNSTNTNKQSPN*LDIGSVDFSFFFFLNSNYHFVAPVFIR*NT 638
           I+  +  SH  R + LTK   N N+ SP          S F+  N   +FV    ++   
Sbjct: 673 ILEFQSFSHISRIQFLTKIWDNLNRFSPK------EKTSTFYLSNHLVNFVTETIVQ--- 723

Query: 639 NRNPRRELNTIPYVFQKC 692
              PRR  N + Y  Q C
Sbjct: 724 EEEPRRRTNVLAYFIQVC 741


>SPBC25H2.15 |||programmed cell death protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 396

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 371 KILLDCYASFQRENLTKKAKFV 436
           ++LL CYA  + +NL ++A +V
Sbjct: 59  RLLLQCYAPLEGDNLKERALYV 80


>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 440

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 315 YADSSLTIAVLSGDLTLNRKYYLIVMRHFREKI 413
           Y D  + I V SGD     K  +    +FREK+
Sbjct: 259 YGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKV 291


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,931,377
Number of Sequences: 5004
Number of extensions: 57689
Number of successful extensions: 134
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)