Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N16
         (764 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0232 + 6614784-6614882,6616145-6616477,6616708-6616967,661...    29   3.1  
04_04_0648 - 26936123-26936447,26936540-26936841,26937043-269379...    29   5.4  
07_01_0657 - 4915264-4915386,4915586-4915714,4917773-4917859,491...    28   9.4  

>03_02_0232 +
           6614784-6614882,6616145-6616477,6616708-6616967,
           6617328-6617469,6617567-6617938,6618056-6618187,
           6618907-6619035,6619125-6621188
          Length = 1176

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +3

Query: 402 REKI*RKRPNLWEKNLRFCSTIIRLRKGSHRERSLTKNSTNTNKQSPN 545
           REK  R++  L EK       I+ L+       S  +NST+TN +S N
Sbjct: 515 REKKHRRKERLKEKERDKGKEILGLKSSDDNSCSTLRNSTSTNDESTN 562


>04_04_0648 -
           26936123-26936447,26936540-26936841,26937043-26937915,
           26937995-26938108,26938285-26938612,26938719-26938843,
           26938926-26938991,26939099-26939166,26939262-26939343,
           26939433-26939546,26939647-26939747,26940429-26940678
          Length = 915

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/82 (26%), Positives = 39/82 (47%)
 Frame = +3

Query: 138 TSNVNSCSEVT*NVTEXLR*IDFIQNTRI*ARKSVKKGRGIMEDESKPKKKTNSIKSQSY 317
           T +V    E   + TE    +D +QN R        +GR + + E KP++  N+++  + 
Sbjct: 423 TFDVPQTCEDEQSTTESSEVVDSVQNFRF-------QGRRVAQREHKPQQAENNVQFTTP 475

Query: 318 ADSSLTIAVLSGDLTLNRKYYL 383
           +  S++    SG L  NR  +L
Sbjct: 476 SRYSVSSPPFSGMLPTNRSDHL 497


>07_01_0657 -
           4915264-4915386,4915586-4915714,4917773-4917859,
           4918220-4918368,4918498-4918555,4918632-4920614,
           4922064-4922123
          Length = 862

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -1

Query: 161 GTRIHIRCFVHYAXHTRHEXAKNSTGXKGKKRC-SAN 54
           G  +H +   HY  H RH+ A  +    G   C SAN
Sbjct: 175 GQDVHAKDNGHYISHRRHDKAAGTVASDGSTNCESAN 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,182,515
Number of Sequences: 37544
Number of extensions: 308637
Number of successful extensions: 574
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 574
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)