Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N16
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U20862-3|AAN65283.1|  137|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U20862-2|AAK29864.1|  179|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AF248541-1|AAF63761.1|  179|Caenorhabditis elegans cysteine-rich...    29   3.6  
Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical ...    28   8.4  

>U20862-3|AAN65283.1|  137|Caenorhabditis elegans Hypothetical
           protein W06E11.5b protein.
          Length = 137

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   FCCCSIGLNSFPLSC 50
           FCCCSIG + +P+ C
Sbjct: 105 FCCCSIGCSMWPVLC 119


>U20862-2|AAK29864.1|  179|Caenorhabditis elegans Hypothetical
           protein W06E11.5a protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   FCCCSIGLNSFPLSC 50
           FCCCSIG + +P+ C
Sbjct: 105 FCCCSIGCSMWPVLC 119


>AF248541-1|AAF63761.1|  179|Caenorhabditis elegans cysteine-rich
           hydrophobic protein protein.
          Length = 179

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = +3

Query: 6   FCCCSIGLNSFPLSC 50
           FCCCSIG + +P+ C
Sbjct: 105 FCCCSIGCSMWPVLC 119


>Z70311-3|CAA94372.1|  546|Caenorhabditis elegans Hypothetical
           protein T25B9.4 protein.
          Length = 546

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +3

Query: 459 STIIRLRKGSHRERSLTKNSTNTNKQSP 542
           ST+ R +K + ++ S+T  +TNTN+  P
Sbjct: 462 STLKRKKKKTSKDSSMTTTTTNTNESEP 489


>AL021470-3|CAA16291.2|  414|Caenorhabditis elegans Hypothetical
           protein Y17D7A.1 protein.
          Length = 414

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/58 (29%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +2

Query: 398 FQRENLTKKAKFVGKKS*ILLHDNTPSQRISS*TKF--DQKLNKYQQAITELTRYWFS 565
           + + NL K A+ + K    + HD++PSQ +   TK+  ++  + ++Q   + TR WF+
Sbjct: 158 YTKSNLQKLAEALQKID--ICHDSSPSQPVKLVTKYGKEEVFSFFEQDFLKATR-WFT 212


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,049,235
Number of Sequences: 27780
Number of extensions: 315460
Number of successful extensions: 724
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 724
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)