Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N14
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    67   4e-12
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    57   4e-09
SPBC577.08c |txl1|trx3|thioredoxin-like I protein Txl1|Schizosac...    54   4e-08
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po...    48   2e-06
SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|c...    46   7e-06
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    36   0.008
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    27   4.8  
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ...    26   8.4  

>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 35/96 (36%), Positives = 53/96 (55%)
 Frame = -1

Query: 885 DSDDLKTRLAEAXDKLXVIDFMATWXGPCKMIGPKLDEIAXEMXXXXXXXXXXXXXXXXI 706
           DS + K+ + +  DKL V+DF ATW GPCK I PK ++ +                   I
Sbjct: 7   DSSEFKSIVCQ--DKLVVVDFFATWCGPCKAIAPKFEQFS-NTYSDATFIKVDVDQLSEI 63

Query: 705 ASEYNINSMPTFVFVKNGKKLDEFSGANVDXLKTTI 598
           A+E  +++MP+F   KNG+K++E  GAN   L+ +I
Sbjct: 64  AAEAGVHAMPSFFLYKNGEKIEEIVGANPAKLEASI 99


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 56.8 bits (131), Expect = 4e-09
 Identities = 31/105 (29%), Positives = 55/105 (52%)
 Frame = -1

Query: 900 VHSHQDSDDLKTRLAEAXDKLXVIDFMATWXGPCKMIGPKLDEIAXEMXXXXXXXXXXXX 721
           V++ +   D  TR++   DK+ V+DF A W GPCK + P L++++ E             
Sbjct: 19  VNAVESFGDYNTRISA--DKVTVVDFYADWCGPCKYLKPFLEKLS-EQNQKASFIAVNAD 75

Query: 720 XXXXIASEYNINSMPTFVFVKNGKKLDEFSGANVDXLKTTILKHK 586
               IA +  + ++PT V  + G++LD   GA+V  L + + K++
Sbjct: 76  KFSDIAQKNGVYALPTMVLFRKGQELDRIVGADVKTLSSLLAKYQ 120


>SPBC577.08c |txl1|trx3|thioredoxin-like I protein
           Txl1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 290

 Score = 53.6 bits (123), Expect = 4e-08
 Identities = 27/79 (34%), Positives = 38/79 (48%), Gaps = 1/79 (1%)
 Frame = -1

Query: 831 IDFMATWXGPCKMIGPKLDEIAXEMXXXXXXXXXXXXXXXXI-ASEYNINSMPTFVFVKN 655
           +D  A W GPCK I P   ++A +                   AS   + +MPTFVF +N
Sbjct: 24  VDCYADWCGPCKAISPLFSQLASKYASPKFVFAKVNVDEQRQIASGLGVKAMPTFVFFEN 83

Query: 654 GKKLDEFSGANVDXLKTTI 598
           GK++D  +GAN   LK  +
Sbjct: 84  GKQIDMLTGANPQALKEKV 102


>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 492

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 23/74 (31%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
 Frame = -1

Query: 846 DKLXVIDFMATWXGPCKMIGPKLDEIAXEM-XXXXXXXXXXXXXXXXIASEYNINSMPTF 670
           DK+ ++ F A W G CK + P+ +  A E+                 + SEY+I   PT 
Sbjct: 39  DKVLMVKFYAPWCGHCKALAPEYESAADELEKDGISLVEVDCTEEGDLCSEYSIRGYPTL 98

Query: 669 VFVKNGKKLDEFSG 628
              KNGK++ ++SG
Sbjct: 99  NVFKNGKQISQYSG 112



 Score = 31.1 bits (67), Expect = 0.22
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 3/85 (3%)
 Frame = -1

Query: 834 VIDFMATWXGPCKMIGPKLDEIAXEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKN 655
           +++F A W G CK + P  +++A E                   S  +I+  PT +F K 
Sbjct: 377 LVEFYAPWCGHCKNLAPTYEKLAEEYSDDSNVVVAKIDATENDIS-VSISGFPTIMFFKA 435

Query: 654 GKKLD--EFSG-ANVDXLKTTILKH 589
             K++   + G   ++ L   I KH
Sbjct: 436 NDKVNPVRYEGDRTLEDLSAFIDKH 460


>SPBC26H8.06 |grx4||glutaredoxin Grx4|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 23/88 (26%), Positives = 38/88 (43%)
 Frame = -1

Query: 861 LAEAXDKLXVIDFMATWXGPCKMIGPKLDEIAXEMXXXXXXXXXXXXXXXXIASEYNINS 682
           L    +++ +++F A W  PCK +    D+ A +                  A  +++N+
Sbjct: 15  LQNGKEQIILLNFYAPWAAPCKQMNQVFDQFAKDTKNAVFLKIEAEKFSDI-AESFDVNA 73

Query: 681 MPTFVFVKNGKKLDEFSGANVDXLKTTI 598
           +P FV +   K L   SGAN   LK  I
Sbjct: 74  VPLFVLIHGAKVLARISGANPQKLKAAI 101


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 27/97 (27%), Positives = 45/97 (46%), Gaps = 4/97 (4%)
 Frame = -1

Query: 888 QDSDDLKTRLAEAXDKLXVIDFMATWXGPCKMIGPKLDEIA--XEMXXXXXXXXXXXXXX 715
           Q  ++L+  +  A  K  +I+F ATW G CK + P  +E+    E               
Sbjct: 26  QSLNELENTI-RASKKGALIEFYATWCGHCKSLAPVYEELGALFEDHNDVLIGKIDADTH 84

Query: 714 XXIASEYNINSMPTFV-FVKNGKKLDEFSGA-NVDXL 610
             +A +Y+I   PT + F  +G +  ++S A +VD L
Sbjct: 85  SDVADKYHITGFPTLIWFPPDGSEPVQYSNARDVDSL 121


>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 356

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 2/59 (3%)
 Frame = +1

Query: 13  LFLSHCKIHSNHPGLSSLSAXLKRISTALKKHASPCITXKKKKHXXTCYL--QKFLKAR 183
           + L+HCK+HS    L   +   K+ S+A+ K     +   +K     C L   K  K R
Sbjct: 33  VILTHCKLHSKM--LEPKAIVYKKNSSAIPKRVDNILLRSQKPKHIECLLVDSKITKTR 89


>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 726

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/60 (28%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
 Frame = -1

Query: 807 GPCKMIGPKLD---EIAXEMXXXXXXXXXXXXXXXXIASEYNINSMPTFVFVKNGKKLDE 637
           G CK +GP  D   E A E                 ++S  NI ++PT    +NG+ ++E
Sbjct: 55  GACKRLGPMWDNMVEKAKEQVEGSNFHFGEVDCSKELSSCANIRAVPTLYLYQNGEIVEE 114


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,199
Number of Sequences: 5004
Number of extensions: 42434
Number of successful extensions: 85
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 78
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)