Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N13
         (571 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_04_0129 + 17520753-17520842,17521651-17521741,17521887-175220...   164   4e-41
07_03_0493 + 18747427-18748356,18748594-18748697,18749586-187497...    28   4.6  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    28   4.6  
01_06_1208 + 35424241-35424370,35424415-35424728,35424782-354249...    28   6.0  
11_01_0645 + 5185341-5185568,5185773-5185823                           27   8.0  
05_05_0239 - 23543592-23544293,23544482-23544634,23544737-235449...    27   8.0  
03_02_0901 + 12267042-12267182,12267949-12268095,12268163-122682...    27   8.0  

>03_04_0129 +
           17520753-17520842,17521651-17521741,17521887-17522070,
           17522149-17522224
          Length = 146

 Score =  164 bits (399), Expect = 4e-41
 Identities = 72/128 (56%), Positives = 97/128 (75%)
 Frame = -2

Query: 450 TVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHI 271
           TVKDV   + VK  +AHLK++GK+++PE +D+VKTARFKEL PYDPDW+Y R A+I R I
Sbjct: 8   TVKDVNPHEFVKAYSAHLKRSGKMELPEWVDIVKTARFKELPPYDPDWYYTRAASIARKI 67

Query: 270 YIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDGGRMXT 91
           Y+R  +GV    KI+GGR+RNG  P HFC+SSG+I+R  LQ L+ + +++    GGR+ T
Sbjct: 68  YLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLIT 127

Query: 90  TQGRRDLD 67
           +QGRRDLD
Sbjct: 128 SQGRRDLD 135


>07_03_0493 +
           18747427-18748356,18748594-18748697,18749586-18749795,
           18749992-18750597,18750819-18751095,18751163-18751310,
           18751957-18752044,18752167-18752284
          Length = 826

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +3

Query: 219 AHQRSW*QSLLQQVSECKYDEGWQHNAHRTNQGHTEPAL*SELSLQDPCAQV 374
           A QR   Q  L  VS     EGWQH++        +  L  E+ ++   AQV
Sbjct: 671 ADQRVSAQCSLAPVSHLHQQEGWQHSSFEHQHHENQNFLEMEVRVRSEMAQV 722


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +1

Query: 343 SCLYKIHVLRYLDFARFF*VS-SDSFNNLVLFNILYCDGTHL 465
           S +YK+ +LRYLD +     S S SFN+L+    L    T+L
Sbjct: 550 SSVYKLKLLRYLDASSLRISSFSKSFNHLLNLQALILSNTYL 591


>01_06_1208 +
           35424241-35424370,35424415-35424728,35424782-35424967,
           35425361-35425523,35425601-35425787,35425875-35426016
          Length = 373

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 72  GLVSLVWXXCAHRPELSQQASMPPTIAKPCVQYCLMTCRN 191
           G+  L      H  +  +  + P TIA+  +QYCL TC N
Sbjct: 105 GVFHLASPLTLHPTQDPEATNSPFTIAQLQLQYCLHTCTN 144


>11_01_0645 + 5185341-5185568,5185773-5185823
          Length = 92

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 273 IYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARK 157
           ++ +SP  +  +   + GR+R G  P    R +G IA +
Sbjct: 18  VHCKSPAALLGIESPYSGRRRVGARPRGGSRQAGQIAER 56


>05_05_0239 -
           23543592-23544293,23544482-23544634,23544737-23544922,
           23544951-23545097,23545274-23545411,23545527-23545727
          Length = 508

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = -2

Query: 561 RPADGPHGYSLNIRNIPLQ*NFLNSKITIYVCKMRSVTVKDVEQDKIVKTVAAHLKKTGK 382
           R  DG HG  L+IR      +  NS + +   +  S T+ D E  +I  +         K
Sbjct: 173 RTGDGVHGRKLHIRRKACSMDLRNSSMGLSSPEAMSPTMSDTESPQIKASRDVASAMAAK 232

Query: 381 VKV 373
           VK+
Sbjct: 233 VKL 235


>03_02_0901 + 12267042-12267182,12267949-12268095,12268163-12268253,
            12268367-12268485,12268779-12268969,12269440-12269650,
            12270072-12270309,12270944-12271329,12271933-12271956,
            12271984-12272077,12272341-12272525,12273025-12273255,
            12273665-12273730,12273816-12274034,12274764-12275003,
            12275244-12275423,12276269-12276535,12276612-12276815,
            12276896-12277048
          Length = 1128

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = -2

Query: 432  QDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAILRHIY 268
            +D+I+ +    ++    V+VP + +LV TA    L P D  W  +R  A LR  +
Sbjct: 947  EDRILMSDIVFMRAWVNVEVPTYCNLVTTA----LQPQDETWQGMRTTAELRRAH 997


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,860,612
Number of Sequences: 37544
Number of extensions: 293163
Number of successful extensions: 675
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 675
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)