Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N13
         (571 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical pr...   151   3e-37
AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal pro...   151   3e-37
Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical p...    28   5.4  

>Z81586-2|CAB04689.1|  146|Caenorhabditis elegans Hypothetical
           protein T05F1.3 protein.
          Length = 146

 Score =  151 bits (367), Expect = 3e-37
 Identities = 72/132 (54%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -2

Query: 459 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 280
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 279 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 103
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 102 RMXTTQGRRDLD 67
           R+ + QGR+DLD
Sbjct: 122 RILSKQGRKDLD 133


>AF016512-1|AAB69445.1|  146|Caenorhabditis elegans ribosomal
           protein S19 protein.
          Length = 146

 Score =  151 bits (367), Expect = 3e-37
 Identities = 72/132 (54%), Positives = 94/132 (71%), Gaps = 1/132 (0%)
 Frame = -2

Query: 459 RSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYDPDWFYVRCAAIL 280
           R+ ++KDV+Q +  K++A  LKK+GKVKVPE  DLVK    KELAP DPDWFY R A++ 
Sbjct: 3   RATSIKDVDQHEATKSIAHFLKKSGKVKVPEWSDLVKLGVNKELAPVDPDWFYTRAASLA 62

Query: 279 RHIYIRSPVGVKTVTKIFGGRKRNGVTPSHFCRSSGSIARKALQSLEALKLVEKVQDG-G 103
           RH+Y R P G+    K++GG KR GV P+HF  S+G+  RKA+Q LE +K VEK  DG G
Sbjct: 63  RHLYFR-PAGIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKHPDGKG 121

Query: 102 RMXTTQGRRDLD 67
           R+ + QGR+DLD
Sbjct: 122 RILSKQGRKDLD 133


>Z70684-10|CAA94602.2|  684|Caenorhabditis elegans Hypothetical
           protein F28D1.9 protein.
          Length = 684

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 18/72 (25%), Positives = 30/72 (41%)
 Frame = -2

Query: 495 LNSKITIYVCKMRSVTVKDVEQDKIVKTVAAHLKKTGKVKVPEHMDLVKTARFKELAPYD 316
           L S +T Y         +DVE+    K V  +L++ G +  P     +  +  +   P+D
Sbjct: 611 LASSLTSYAIPQFMRICQDVEKTGTFKLVKTNLQRLGIMDAPSDSIYIYNSENRNFVPFD 670

Query: 315 PDWFYVRCAAIL 280
            D   +RC   L
Sbjct: 671 ND---LRCKVSL 679


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,477,929
Number of Sequences: 27780
Number of extensions: 253191
Number of successful extensions: 557
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)