Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N10
         (820 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    55   1e-08
SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr 3|||Ma...    41   2e-04
SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    40   6e-04
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces...    38   0.002
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce...    30   0.45 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    29   0.79 
SPBC11G11.02c |end3||actin cortical patch component End3 |Schizo...    28   1.4  
SPAC926.03 |rlc1||myosin II regulatory light chain |Schizosaccha...    28   1.8  
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    28   1.8  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.2  
SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    26   5.6  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   9.8  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   9.8  

>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 55.2 bits (127), Expect = 1e-08
 Identities = 24/37 (64%), Positives = 31/37 (83%)
 Frame = -2

Query: 804 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 694
           LGE+L+ EEV +MIREAD DGDG +NYEEF  +++SK
Sbjct: 114 LGERLSQEEVADMIREADTDGDGVINYEEFSRVISSK 150



 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -2

Query: 804 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 694
           LG+  T  E+ +MI E D DG+G +++ EF+TMM  K
Sbjct: 41  LGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARK 77



 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 4/40 (10%)
 Frame = -2

Query: 804 LGEKLTDEEVDEMIREA----DIDGDGQVNYEEFVTMMTS 697
           +  K+ D + +E +REA    D DG+G +  EE   ++TS
Sbjct: 74  MARKMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTS 113


>SPCC1682.04 |cdc31||centrin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 176

 Score = 41.1 bits (92), Expect = 2e-04
 Identities = 15/34 (44%), Positives = 25/34 (73%)
 Frame = -2

Query: 804 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 703
           L E + D+E++ MI E D+D DG++N +EF+ +M
Sbjct: 139 LNENIDDQELEAMIEEFDLDQDGEINEQEFIAIM 172


>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 39.5 bits (88), Expect = 6e-04
 Identities = 17/34 (50%), Positives = 26/34 (76%)
 Frame = -2

Query: 804 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMM 703
           LGEKL++EE+DE+++   +  DG VNY +FV M+
Sbjct: 106 LGEKLSNEEMDELLKGVPVK-DGMVNYHDFVQMI 138


>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 143

 Score = 37.9 bits (84), Expect = 0.002
 Identities = 17/37 (45%), Positives = 24/37 (64%)
 Frame = -2

Query: 804 LGEKLTDEEVDEMIREADIDGDGQVNYEEFVTMMTSK 694
           LGEKL+D EV  M++EAD    G  +Y +FV  + +K
Sbjct: 107 LGEKLSDNEVQLMVQEADPTNSGSFDYYDFVQRIMAK 143


>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 174

 Score = 29.9 bits (64), Expect = 0.45
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = -2

Query: 807 HLGEKLTDEEVDEMIREADIDGDGQVNYEEF 715
           +L E    + VD+ I E D D DG++++EEF
Sbjct: 126 NLREDQLQQIVDKTIMEVDKDRDGKISFEEF 156


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 29.1 bits (62), Expect = 0.79
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = -2

Query: 783 EEVDEMIREADIDGDGQVNYEEFV 712
           +EV E IRE ++D  G+V  E+FV
Sbjct: 54  DEVREAIREVNVDSSGRVEPEDFV 77


>SPBC11G11.02c |end3||actin cortical patch component End3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 375

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -2

Query: 795 KLTDEEVDEMIREADIDGDGQVNYEEFVTMM 703
           KL+ ++++++   ADID DG  +++EF   M
Sbjct: 36  KLSSDKLEKIWDLADIDDDGMFDFDEFAIAM 66


>SPAC926.03 |rlc1||myosin II regulatory light chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 783 EEVDEMIREADIDGDGQVNYEEFVTMMTS 697
           +E+ E     D DGDG +  E+  TM+TS
Sbjct: 48  QELKEAFALLDKDGDGNIGREDVKTMLTS 76


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = +1

Query: 607 SNTMLILCVMKQNVYLNSLLFTHTLAGGSLRRHHGDE 717
           S T+L + +M QN +LN+  F H  A  + R+ + +E
Sbjct: 199 SQTVLEILLMNQNSFLNNFNFEHIKADFAFRQKNYEE 235


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 435 KGKTSGVRRNVMV*VSGSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 280
           +  + G+R ++     GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 9   QSSSKGLRSSIFF--QGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 798 EKLTDEEVDEMIREADIDGDGQVNYEE 718
           E+  +EE DEM  E D +G+G    EE
Sbjct: 176 EEEEEEEADEMEEEFDEEGEGDEEEEE 202


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 247 NVYSVSASSQPEATPRSLAPCTFINVINV*KNLTNSVKRIN 125
           N+Y       PE T +S+ PCT + ++ + + L    K IN
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKILEYLGVYNKIIN 172


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 649 YLNSLLFTHTLAGGSLRRHHGDELFVIDLAVAV 747
           YLNSLL  H   G  L++ H   +    LAVA+
Sbjct: 299 YLNSLLSVHEKDGVLLQKFHNSYVQYQKLAVAL 331


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,672,106
Number of Sequences: 5004
Number of extensions: 48843
Number of successful extensions: 134
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 131
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 400438000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)