Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_N07
         (738 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   3.0  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    23   3.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   4.0  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     21   9.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.1  
AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    21   9.1  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.1  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           21   9.1  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 643 WTQRLGVMCQILTQSCQPHYCI-LW 572
           W+  LG +C + +  C P Y I +W
Sbjct: 527 WSHVLGWLCGLSSMLCIPGYMIYIW 551


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.0 bits (47), Expect = 3.0
 Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
 Frame = -3

Query: 643 WTQRLGVMCQILTQSCQPHYCI-LW 572
           W+  LG +C + +  C P Y I +W
Sbjct: 580 WSHVLGWLCGLSSMLCIPGYMIYIW 604


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 11/38 (28%), Positives = 18/38 (47%)
 Frame = -1

Query: 591 PIIVSCGWDRTVKVWHLTNCKLKINHLGHSGYLNTVTV 478
           P  +S  W +    W L  CKL+      S Y++ +T+
Sbjct: 88  PFELSVFWQQYPWQWGLGICKLRAYVSETSSYVSVLTI 125


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/20 (40%), Positives = 10/20 (50%)
 Frame = -1

Query: 612 FSPNHANPIIVSCGWDRTVK 553
           F     NPI V   WD+ V+
Sbjct: 323 FDRMQGNPICVQIPWDKNVE 342


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +2

Query: 374 ISLWSKVWRCLPSFRSHNIAFMSLPPDAHKEPSGDTV 484
           +S+    W+ LP     ++    + P + K+ +GD +
Sbjct: 12  LSIVDAAWKPLPENLKEDLIVYQVYPRSFKDSNGDGI 48


>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 626 CHVSDSHPIMPTPLL 582
           CH  D++ ++ TP L
Sbjct: 463 CHADDAYMVVDTPFL 477


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/37 (21%), Positives = 18/37 (48%)
 Frame = +2

Query: 374 ISLWSKVWRCLPSFRSHNIAFMSLPPDAHKEPSGDTV 484
           +S+    W+ LP     ++    + P + K+ +GD +
Sbjct: 12  LSIVDAAWKPLPENLKEDLIVYQVYPRSFKDSNGDGI 48


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 626 CHVSDSHPIMPTPLL 582
           CH  D++ ++ TP L
Sbjct: 463 CHADDAYMVVDTPFL 477


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,006
Number of Sequences: 438
Number of extensions: 4616
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23023035
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)