Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_N01
(541 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 30 0.25
SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces ... 28 1.0
SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz... 27 1.8
SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces pomb... 27 2.3
SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces p... 27 2.3
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 26 3.1
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 26 4.1
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 26 4.1
SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|ch... 26 4.1
SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3 Brl2|Schizosa... 25 5.4
SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr 1||... 25 5.4
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy... 25 5.4
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 25 7.2
SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyce... 25 7.2
SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces po... 25 9.5
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 29.9 bits (64), Expect = 0.25
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +1
Query: 397 LNCIKIRCDFSKLFRDFLSRMTNQHT*RFSKYHYAFEAFEN 519
L+C K C F+ ++ DF S +TN + R Y F EN
Sbjct: 828 LSCSKYMCSFTFIYSDFTSNITNNYRPRI-YYLAQFSVCEN 867
>SPBC16D10.08c |||heat shock protein Hsp104 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 905
Score = 27.9 bits (59), Expect = 1.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Frame = -2
Query: 198 QKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEKP 70
+KE+L N++ L+K++ E + +AIR + +SD +P
Sbjct: 571 EKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDPNQP 613
>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
Mad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 689
Score = 27.1 bits (57), Expect = 1.8
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 189 QLANLKGHLN-KEIAFHQEQIKRHEDAIRRHKEQMS 85
QL NLK L KE+ F +EQI+ H+++ S
Sbjct: 63 QLENLKNDLKRKELEFEREQIELQRKLAEEHEQKNS 98
>SPBC3F6.04c |||U3 snoRNP protein Nop14 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 827
Score = 26.6 bits (56), Expect = 2.3
Identities = 14/53 (26%), Positives = 27/53 (50%)
Frame = -2
Query: 234 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIE 76
E +E E +K ++E ++ + A Q + +R+ED + EQM D++
Sbjct: 193 ENEKEGEGAHKSKREVMSEIIAKSKHYKAERQAEKERYEDEREKLDEQMEDLQ 245
>SPBC4F6.16c |ero11||ER oxidoreductin Ero1a|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 467
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -2
Query: 165 LNKEIAFHQEQIKRHEDAIRRHKEQMSDI 79
+N+E F E+ KR +D+ R+H +S I
Sbjct: 324 INREQFFADEEAKRFKDSFRKHFRDISRI 352
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 26.2 bits (55), Expect = 3.1
Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Frame = -2
Query: 237 MEAARED-EYFYKKQKEQLANLKGHLN---KEIAFHQEQIKRHEDAIRRHKE-QMSDIEK 73
+EAA+ E + KE A+LK +N KE++ + Q+K + +R + E ++SD+ +
Sbjct: 326 LEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERLRHYDEIEISDMSE 385
Score = 25.0 bits (52), Expect = 7.2
Identities = 16/55 (29%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = -2
Query: 231 AAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKR-HEDAIRRH-KEQMSDIEK 73
A+ + E K+Q EQL + K KE+A + +++ +A+ K ++S++EK
Sbjct: 1474 ASSDAEQITKEQFEQLKSEKERTEKELADSKNELEHLQSEAVDADGKTEISNLEK 1528
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = -2
Query: 222 EDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSD 82
E + + ++EQL N K + K H E++ + AI++ QM++
Sbjct: 283 ETNIYERYRREQLTNRKSGIPKLKKEHYERLNNEKRAIQQKITQMTN 329
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/23 (39%), Positives = 17/23 (73%)
Frame = -2
Query: 144 HQEQIKRHEDAIRRHKEQMSDIE 76
H+E+IK E+ + K++MSD++
Sbjct: 766 HEEKIKSFEEKLSALKKEMSDVD 788
>SPBC119.12 |||Golgi matrix protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 401
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/56 (23%), Positives = 32/56 (57%)
Frame = -2
Query: 240 KMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMSDIEK 73
K EA + + Y K+Q +NL G ++ + E++K+ + ++++++ ++EK
Sbjct: 61 KEEAYQTLKNSYNSLKQQHSNLLGKVSGIKSTLGERLKKDSQELAQNRKRIQELEK 116
>SPCC970.10c |brl2|rfp1|ubiquitin-protein ligase E3
Brl2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = -2
Query: 240 KMEAAREDEYFYKKQKEQLANLK 172
K+EA ++ E YK + ++LANL+
Sbjct: 374 KLEAKKQKEKVYKDKLDELANLE 396
>SPAC9G1.11c |spn4||septin Spn4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 380
Score = 25.4 bits (53), Expect = 5.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = -2
Query: 234 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAIRRHKEQMS 85
E R +E +++ +++L + LNK++ QIK+ E I R K S
Sbjct: 327 EQVRVEETRFRQWEQRLIAERDSLNKDLEAQHVQIKQIELEIERLKAATS 376
>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 5.4
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = -2
Query: 234 EAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQI 130
E+ E FY+K E+ K H +E+ F +E I
Sbjct: 180 ESVLYSEEFYEKSDEEEDEEKSHSAEELEFGEEDI 214
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 25.0 bits (52), Expect = 7.2
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 168 HLNKEIAFHQEQIKRHEDAIRRHKEQM 88
HLN E++ H+ K+H + +K+Q+
Sbjct: 1022 HLNNELSSHRNAEKQHLEKENDYKQQL 1048
>SPCC70.02c |||mitochondrial ATPase inhibitor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 90
Score = 25.0 bits (52), Expect = 7.2
Identities = 13/46 (28%), Positives = 24/46 (52%)
Frame = -2
Query: 246 FGKMEAAREDEYFYKKQKEQLANLKGHLNKEIAFHQEQIKRHEDAI 109
F E A+ED + ++ + EQL LK + + H+E++ E +
Sbjct: 41 FESREKAKEDFFVHQHEIEQLRKLK----ESLKLHREELDELESRV 82
>SPBC29A10.09c |||CAF1 family ribonuclease|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 427
Score = 24.6 bits (51), Expect = 9.5
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +1
Query: 370 KEIHDFL*CLNCIKIRCDFSKLFRDFLSRMTNQHT 474
KE+ + + + I C+FS L RDF + N++T
Sbjct: 13 KELEKHVDSAHYVSIDCEFSGLLRDF--NLNNKNT 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,917,495
Number of Sequences: 5004
Number of extensions: 33525
Number of successful extensions: 115
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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