Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M23
         (712 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   6.1  

>SPBPB2B2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 220

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 91  PYQQIFEIAEIG*SVYVFSRRTHVYRSQFIITIIVART 204
           PY Q F+IAEI   +  +S + H +   F   I+  R+
Sbjct: 78  PYAQAFDIAEIVNLIREYSHKYHKHIPAFSAYIVAFRS 115


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 7/24 (29%), Positives = 16/24 (66%)
 Frame = +3

Query: 285  YYGTSSYLVILKPNLQHVHRTPYN 356
            ++ T +Y++  +PN ++V+   YN
Sbjct: 1079 FFSTDTYVIFFEPNTENVYINSYN 1102


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,627,124
Number of Sequences: 5004
Number of extensions: 51757
Number of successful extensions: 107
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)