Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M22
         (829 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC553.09c |spb70|pol12|DNA polymerase alpha B-subunit|Schizosa...    31   0.20 
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.80 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    27   3.2  
SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101 |Sch...    26   5.7  
SPBC365.13c |hba1|caf1|Ran GTPase binding protein Hba1|Schizosac...    26   7.5  
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    26   7.5  
SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces p...    26   7.5  

>SPCC553.09c |spb70|pol12|DNA polymerase alpha
           B-subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +2

Query: 605 LGIPL*LHTLPNTCLFSKQTVSSGQEVSDVLQHLNKTD 718
           LG+P      PN C+FS   V  G   +D+L H ++ +
Sbjct: 411 LGLPSNFKCFPNPCMFSINDVVFGVSTNDILLHTSREE 448


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 29.1 bits (62), Expect = 0.80
 Identities = 29/99 (29%), Positives = 46/99 (46%), Gaps = 2/99 (2%)
 Frame = +1

Query: 151 SSRVGTPITTLSEVASLSIPSQ*RFPSG*AGEMALTKATF--RGSIGSYFMS*RMYPPHF 324
           S+    P ++ S  AS S+ S    PS  +  ++ + AT     S  S   S     P  
Sbjct: 17  SASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSSSATAISSSSSSSPLSSSSFTSPAS 76

Query: 325 SSFLISL*NQSTKSASK*RFGPTAW*TSHLVSSSRAAFT 441
           SSF+ SL + S++ +S      T+  ++ L SSS A+ T
Sbjct: 77  SSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPT 115


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -3

Query: 692 HPKPLVLKKPSAWKISKYLGECAVREEY 609
           H  P  L +PSA ++ KYL E A +  Y
Sbjct: 4   HDPPAPLSQPSASRLQKYLLESAEKHAY 31


>SPAC19A8.13 |usp101|snp1|U1 snRNP-associated protein Usp101
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 261

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 10/16 (62%), Positives = 13/16 (81%)
 Frame = +1

Query: 25  ESTGGGSGFGNSPSRS 72
           +S+GGGS FG  P+RS
Sbjct: 227 KSSGGGSRFGRGPTRS 242


>SPBC365.13c |hba1|caf1|Ran GTPase binding protein
           Hba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 399

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -1

Query: 244 HQLIHSEIFTGKELKGKLLQIMW*SACPPLRIWASP*RTWKTRFRG 107
           HQL  SEI TG+E +  +  +        L + A   +TWK R +G
Sbjct: 261 HQLSDSEIITGEEEEESIFSVR-----ARLYVVADEKKTWKERGQG 301


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = -3

Query: 506  LYKNGLATVKQPVFVSDVAQGI 441
            L K GL++ K P+FVS + +G+
Sbjct: 1016 LGKLGLSSSKSPIFVSSILEGL 1037


>SPBP8B7.20c |||RNA methyltransferase Nop2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 608

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 621 DCTLSQILAYFPSRRFLQDKRFRMFFSI*IRQMNESLNSFFSADSGNSSYTINVNII 791
           D  L+ I AY+   RFL +K F +F       ++E++  FF A+      TI  N +
Sbjct: 223 DQLLNDICAYYGYSRFLAEKLFELF------SVSEAV-EFFEANEMPRPVTIRTNTL 272


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,623,858
Number of Sequences: 5004
Number of extensions: 80349
Number of successful extensions: 229
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 225
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)