Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_M18
(429 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.17 |clr2||chromatin silencing protein Clr2|Schizosacchar... 28 0.71
SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces pombe... 28 0.71
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa... 26 2.9
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 25 6.6
SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces pom... 25 6.6
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote... 24 8.7
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 24 8.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 8.7
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe... 24 8.7
SPBC4F6.09 |str1||siderophore-iron transporter Str1 |Schizosacch... 24 8.7
>SPAC1B3.17 |clr2||chromatin silencing protein
Clr2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 537
Score = 27.9 bits (59), Expect = 0.71
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = -3
Query: 220 LEVLCSCVDVVQKWYHPW 167
+E +C DV+ +WY PW
Sbjct: 471 VEYVCPFADVLGRWYEPW 488
>SPBC8D2.18c |||adenosylhomocysteinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 27.9 bits (59), Expect = 0.71
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = +1
Query: 259 LMCAISHPSEHEHCHVINLLLGHICIITLQESTPSHLHLI 378
L CA HPS C N +L I + T S P +H++
Sbjct: 348 LGCATGHPSFVMSCSFTNQVLAQIALWTDNTSYPLGVHML 387
>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 2.9
Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Frame = +1
Query: 220 ATDVMLLHLSPYILMCAISHP-SEHEHCHVINLLLGHICIITLQ 348
ATD+ L Y + HP H C N+L G+ C++ LQ
Sbjct: 860 ATDIFALGCIFYYTLTGGMHPFGSHYDCEG-NILKGNYCLVHLQ 902
>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1485
Score = 24.6 bits (51), Expect = 6.6
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +1
Query: 304 VINLLLGHICIITLQESTPSHLHLIYMSYREPS 402
V L GH+ I+T Q+ SH+ + ++Y E S
Sbjct: 569 VKGLRYGHLMIMTDQDHDGSHIKGLIINYLESS 601
>SPAC3A12.02 |||inorganic pyrophosphatase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 286
Score = 24.6 bits (51), Expect = 6.6
Identities = 13/38 (34%), Positives = 19/38 (50%)
Frame = -3
Query: 151 PGWVQIKCELRILSQFGFNLNPDWELPLKKDTQNQPLK 38
P W Q KCE+ + S F P+K+D +N L+
Sbjct: 57 PRWTQAKCEISLTSPFH---------PIKQDLKNGKLR 85
>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 5 MVFNKHISYTFLQWLILCIFFQWKLPIGVQIETKL 109
+++ K I T QW I + F W +P I ++
Sbjct: 125 LIWGKQIGKTTGQWRIGKVAFAWPIPAHTHIVVRV 159
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 24.2 bits (50), Expect = 8.7
Identities = 17/56 (30%), Positives = 23/56 (41%)
Frame = -3
Query: 289 AQMDVKLRTLICMGLNEEALHLWLEVLCSCVDVVQKWYHPWSFINSPGWVQIKCEL 122
A+ ++ R + EE L LW E+ DV Q S N P V + EL
Sbjct: 186 AEKEIDARLEVINSFEEEILGLWSELGVEPADVPQYEQLLESHTNRPNDVYVTQEL 241
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 24.2 bits (50), Expect = 8.7
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +3
Query: 177 YHF*TTSTQEHNTSSHRCNASSFKPI 254
YH T+S ++SSH ++ S KPI
Sbjct: 424 YHNSTSSRSSSHSSSHSLSSLSSKPI 449
>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 311
Score = 24.2 bits (50), Expect = 8.7
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = +2
Query: 5 MVFNKHISYTFLQWLILCIFFQWKLPIGVQIETKL 109
+++ K I T QW I + F W +P I ++
Sbjct: 125 LIWGKQIGKTTGQWRIGKVAFAWPIPAHTHIVVRV 159
>SPBC4F6.09 |str1||siderophore-iron transporter Str1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 612
Score = 24.2 bits (50), Expect = 8.7
Identities = 14/53 (26%), Positives = 24/53 (45%)
Frame = -1
Query: 237 KHYICGLKYCVLVLMSFKNGIIHGHL*IRLDGYRSNVNYVYFLSLVSI*TPIG 79
+ Y G + +++ G+I L + + S N+ +LVS TPIG
Sbjct: 456 EQYNWGYQIMPQIIVGIGGGVIANLLTVAVQTVVSTENFAIVTALVSTVTPIG 508
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,923,632
Number of Sequences: 5004
Number of extensions: 42107
Number of successful extensions: 108
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 154448264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -