Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_M18
(429 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0658 - 19755757-19756986 31 0.52
02_05_0996 - 33380363-33380597,33380767-33380851,33381206-333815... 31 0.52
01_01_0653 - 4981517-4981738,4981841-4981976,4982066-4982121,498... 30 0.91
02_01_0423 - 3092863-3094959 29 1.6
06_03_1241 + 28615175-28615828 28 2.8
08_02_0659 - 19758925-19760172 27 4.9
06_03_0535 + 21897912-21898064,21898151-21898246,21898362-218984... 27 6.4
06_03_0479 - 21289903-21290124,21290207-21290342,21290435-212904... 27 6.4
01_01_0417 - 3135502-3135672,3135759-3135947,3136037-3136154,313... 27 8.5
>08_02_0658 - 19755757-19756986
Length = 409
Score = 30.7 bits (66), Expect = 0.52
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = -3
Query: 193 VVQKWYHPWSFINSPGWVQIKCELRILSQFGFNLNPDWELPLKKDTQNQ 47
VV +WY P+ FIN G ++K +++ + L WE +D ++
Sbjct: 221 VVGRWYCPFMFINDGGEQRLKDQVKRCMFYEMTLEQRWEEIYTRDNAHR 269
>02_05_0996 -
33380363-33380597,33380767-33380851,33381206-33381557,
33381690-33382340
Length = 440
Score = 30.7 bits (66), Expect = 0.52
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = -3
Query: 388 KTYRLDEDGKVLTPEELLYR-CVQAINLSHDNAHAQMDVKLRTLICMGLNEEALHLWLEV 212
K ++L GK+ + L+R C + L + H MDV R ++C NE+A HL
Sbjct: 156 KLWKLGVPGKI---KHFLWRMCHNTLALRANLHHRGMDVDTRCVMCGQYNEDAGHL---- 208
Query: 211 LCSCVDVVQKWY 176
L C V+KW+
Sbjct: 209 LFKC-KPVKKWW 219
>01_01_0653 -
4981517-4981738,4981841-4981976,4982066-4982121,
4982228-4982284,4982373-4982450,4982533-4982619,
4982707-4982767,4982862-4982950,4983048-4983145,
4983242-4983341,4983983-4984042
Length = 347
Score = 29.9 bits (64), Expect = 0.91
Identities = 19/56 (33%), Positives = 33/56 (58%), Gaps = 7/56 (12%)
Frame = -3
Query: 337 LYRCVQAINLSHDNAHAQMDVKLRTLICMGLN----EEALHLWLEV---LCSCVDV 191
++R +QAIN HD A ++ RTLI +G N ++A+H+ ++ C+ V+V
Sbjct: 220 VWRFLQAINERHDLTEALKKLQCRTLIFVGENSQFHDDAVHMTTKLDRRYCALVEV 275
>02_01_0423 - 3092863-3094959
Length = 698
Score = 29.1 bits (62), Expect = 1.6
Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 352 TPEELLYRC--VQAINLSHDNAHAQMDVKLRTLICM 251
T E +Y C + A+ LS+++ H Q+ K+R L C+
Sbjct: 349 TVPESIYSCRNLSALQLSNNSFHGQLSEKIRNLKCL 384
>06_03_1241 + 28615175-28615828
Length = 217
Score = 28.3 bits (60), Expect = 2.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 268 AISHPSEHEHCHVINLLLGH 327
A SHPS H HC + GH
Sbjct: 12 AASHPSSHHHCRGVRPAAGH 31
>08_02_0659 - 19758925-19760172
Length = 415
Score = 27.5 bits (58), Expect = 4.9
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = -3
Query: 193 VVQKWYHPWSFINSPGWVQIKCELRILSQFGFNLNPDWE 77
VV +WY P+ FI G +K +++ + L WE
Sbjct: 227 VVGRWYCPFMFIKDGGEQWLKDQVKRCMFYKMTLEQSWE 265
>06_03_0535 +
21897912-21898064,21898151-21898246,21898362-21898474,
21898590-21898656,21898741-21898833,21898968-21899111,
21899693-21899781,21899910-21900015,21900119-21900206,
21900304-21900422,21900913-21901247,21901824-21901933,
21902070-21902179,21902303-21902413,21902870-21903174,
21903267-21903375
Length = 715
Score = 27.1 bits (57), Expect = 6.4
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = -3
Query: 256 CMGLNEEALHLWLEVLCSCVDVVQKWYH-PWSFINSPGWVQIKCELRILSQFGFNLN 89
C G + + + +C D Q+WYH P S++N G + + +L +FG +L+
Sbjct: 655 CGGCSYAGTYSEKKCQANCGDASQRWYHVPRSWLNPSGNLVV-----LLEEFGGDLS 706
>06_03_0479 -
21289903-21290124,21290207-21290342,21290435-21290490,
21290734-21290811,21290902-21290988,21291067-21291127,
21291220-21291308,21291448-21291545,21291655-21291754,
21293968-21294030
Length = 329
Score = 27.1 bits (57), Expect = 6.4
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
Frame = -3
Query: 337 LYRCVQAINLSHDNAHAQMDVKLRTLICMGLNE----EALHL 224
++R + IN HD + +++ RTLI +G N EA+H+
Sbjct: 202 VWRFIHTINERHDLTESLKELQCRTLIFVGQNSQFHAEAVHM 243
>01_01_0417 -
3135502-3135672,3135759-3135947,3136037-3136154,
3136398-3137048,3137146-3137309,3138598-3139098
Length = 597
Score = 26.6 bits (56), Expect = 8.5
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = -3
Query: 328 CVQAINLSHDNAHAQMDVKLRTLICMGLNEEALHLWLEVLCSCVDVVQKWY--HPWSFIN 155
C QA+ + ++AH Q+D + T I +E+ +++ + C+ + + HP F
Sbjct: 165 CYQAVVNNLEDAHEQIDAAISTAI-----KESKPVYISISCNLPSIPHPTFSRHPVPFFL 219
Query: 154 SP 149
SP
Sbjct: 220 SP 221
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,664,740
Number of Sequences: 37544
Number of extensions: 241591
Number of successful extensions: 621
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 621
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 802495716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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