Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M16
         (769 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote...    27   3.0  
SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual       27   3.0  
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    25   9.0  

>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 592

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = -3

Query: 275 LKNLTDGAVLKKTTLRTSNVFYLVLSRLNPIHLCVYVSMDLF 150
           +KN+    ++K    +TSNV ++ +S ++  +L    S DL+
Sbjct: 338 IKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLY 379


>SPBC13G1.15c |||dubious|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 111

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 4/44 (9%)
 Frame = +2

Query: 392 LLMTKFYIYLETFRIIVFKFL---KVSLLP-RVNCTHFFKCDMF 511
           L+ +K+Y++ +TFRI+        KVS+LP R+ C  F  C+ F
Sbjct: 60  LIFSKYYLHYKTFRILTIIQSWSDKVSVLPNRLYCLPF--CNAF 101


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 9/33 (27%), Positives = 20/33 (60%)
 Frame = +3

Query: 642 YTNITPLELKWLLSFLFFGKRQKCN*RIVIXEF 740
           Y +++PLEL+WL+  L   ++   + + ++  F
Sbjct: 193 YRSLSPLELRWLIPILLKVRKYGTSEKFILSVF 225


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 458 VSLLPRVNCTHFFKCDMFS 514
           V  L  VNCTH+   D+FS
Sbjct: 369 VGQLDPVNCTHYLLVDLFS 387


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,776,010
Number of Sequences: 5004
Number of extensions: 52494
Number of successful extensions: 131
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)