Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M16
         (769 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0963 + 29252961-29252999,29253108-29253179,29253295-292533...    28   9.4  
01_01_1101 + 8731427-8732938                                           28   9.4  

>03_05_0963 +
           29252961-29252999,29253108-29253179,29253295-29253369,
           29253500-29253583,29253676-29253745,29253842-29253933,
           29254082-29254123,29254241-29254627
          Length = 286

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
 Frame = -3

Query: 293 FIHTLVLKNLTDGAVLKKTTLRTSNVFYLV-LSRLNPIHLCVYVSMDLFFRFI 138
           FI  LV  +     +   TTLRT+N+++ V L RLN  ++    S+ L  RF+
Sbjct: 181 FIKQLVSNSFETTTIASITTLRTANLYWTVSLQRLNNNNI---ESIALILRFL 230


>01_01_1101 + 8731427-8732938
          Length = 503

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +2

Query: 5   HSFLLHCSLLPRGFARHANVTTACYLCN 88
           H    H  LLPRG  RHA V +A  L +
Sbjct: 30  HLLQAHAYLLPRGGHRHARVASALLLAS 57


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,705,824
Number of Sequences: 37544
Number of extensions: 260268
Number of successful extensions: 408
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)