Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M16
         (769 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z92786-8|CAB07210.1|  325|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z75547-6|CAA99903.1|  377|Caenorhabditis elegans Hypothetical pr...    28   6.4  

>Z68299-2|CAA92611.2|  344|Caenorhabditis elegans Hypothetical
           protein T04B2.4 protein.
          Length = 344

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 22/71 (30%), Positives = 36/71 (50%), Gaps = 3/71 (4%)
 Frame = +2

Query: 392 LLMTKFYIYLETFRIIVFKFLKVSLLPRVNCTHFFK-CDMFSDEENRY--EILKITYTQV 562
           L  T F++  + +RI V   ++      V  + FF    +F +E+N    + L +T T +
Sbjct: 143 LFPTIFHLMWKGYRIWVAISIQYIFGLSVGISTFFNPTQLFRNEQNGIVPKFLNVTMTNI 202

Query: 563 FFVSIGNFVFV 595
           FFV  G F+FV
Sbjct: 203 FFVIGGVFLFV 213


>Z92786-8|CAB07210.1|  325|Caenorhabditis elegans Hypothetical
           protein F47H4.11 protein.
          Length = 325

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +2

Query: 611 HKLFLKFSNRLYKYHTFRIKMATFFFVFWKAP 706
           H+LFL     + K   F +K+A F  + WK P
Sbjct: 138 HELFLYNFGEMLKSRKFLLKVAAFDVILWKEP 169


>Z75547-6|CAA99903.1|  377|Caenorhabditis elegans Hypothetical
           protein R11D1.5 protein.
          Length = 377

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/40 (35%), Positives = 26/40 (65%), Gaps = 1/40 (2%)
 Frame = +2

Query: 359 YLILYRMIYSYL-LMTKFYIYLETFRIIVFKFLKVSLLPR 475
           Y+ ++ ++Y+ L L+TK Y++  T R+IV   +K S+  R
Sbjct: 49  YICVFEILYTILGLITKPYVHSYTSRVIVIVDVKNSVFSR 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,158,834
Number of Sequences: 27780
Number of extensions: 285816
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 510
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)