Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M13
         (942 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0447 - 33989301-33989609,33990084-33990242,33990535-339906...    30   2.3  

>03_06_0447 -
           33989301-33989609,33990084-33990242,33990535-33990659,
           33991141-33991336,33991490-33991622,33992246-33992475
          Length = 383

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 565 TIIRYKIQITSNLIPVNTSNGLQRDLKPLNLQFSMERPKLKDTTSXXXXXDTV 723
           T I Y + I   +  ++ +  + RDLKP NL  +  R KLK T       +TV
Sbjct: 159 TAIGYALDIAHAMECLHANGIIHRDLKPDNLLLTANRKKLKLTDFGLAREETV 211


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,957,846
Number of Sequences: 37544
Number of extensions: 329488
Number of successful extensions: 584
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2706104940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)