Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M10
         (373 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom...    29   0.18 
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S...    27   0.94 
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.6  
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    26   2.2  
SPCC132.02 |hst2||Sir2 family histone deacetylase Hst2|Schizosac...    25   2.9  
SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr...    25   5.0  
SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         24   8.8  

>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 329

 Score = 29.5 bits (63), Expect = 0.18
 Identities = 9/31 (29%), Positives = 19/31 (61%)
 Frame = +3

Query: 72  LVKVHTGVSVLSSSLHDWCMTASCAQKYRVH 164
           L K + G+++  +   +W + + C++KYR H
Sbjct: 153 LQKTNKGIAIPDAETFEWLVCSECSEKYRDH 183


>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
           S5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 0.94
 Identities = 21/86 (24%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
 Frame = +3

Query: 102 LSSSLHDWCMTASCAQ--KYRVHSASFEYVTESKGRTPSNSLM*QP*RPLNLSGIGSKAE 275
           L+S+L++  +  S     K + +S+S    +ES+G+T SN+    P +  NLS + +   
Sbjct: 41  LNSNLNEKSVEESSKNETKEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSKLFNDIN 100

Query: 276 RWIAAEAKVTQTQKTSVFNDMLVTNH 353
             ++ E   ++ +    F +  + NH
Sbjct: 101 EDVSIEELKSRFKDHLPFYENYIRNH 126


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -3

Query: 185  NILEGSRMHPILLRARCCHTP 123
            N  EG   HP+LLR    HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092


>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 25.8 bits (54), Expect = 2.2
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = -2

Query: 207 VSFPLIL*HTRRKQNAPDTSARTMLSYTNRVKMS*AQTPLYVPLPKQKKNVTQSAFFEQS 28
           V FP++L + RR+   P  S R    Y++    S  Q P Y    + + + + S+    +
Sbjct: 131 VFFPVLLSYKRREMLPPQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHRSSNSYSSSSNGN 190

Query: 27  RVK 19
            V+
Sbjct: 191 HVR 193


>SPCC132.02 |hst2||Sir2 family histone deacetylase
           Hst2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 2.9
 Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 139 DAVIHQSCKDELSTDTPVCTFTKTEE-KRDTICIL 38
           D+ I ++  ++   D  V  FTK EE K+D + +L
Sbjct: 293 DSTIEKNASEQKKDDNSVNPFTKIEEKKKDEVTLL 327


>SPBC1604.02c |||PPR repeat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 697

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 7/71 (9%)
 Frame = +3

Query: 30  FVQRMQ-IVSRFSSVLVKVHTGVSVLSSSLHDWCMTAS-----CAQKYRVHSASFEY-VT 188
           F++ +Q +V R+  +  K+H  +S L  S  DW +  S        K    + +F Y +T
Sbjct: 409 FLREVQSLVFRYPLLHSKIHLAISTLKDSGCDWNVGLSYLNWLFVNKRITEAINFFYTIT 468

Query: 189 ESKGRTPSNSL 221
            + G  P N L
Sbjct: 469 INAGTRPPNEL 479


>SPCC2H8.03 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 75

 Score = 23.8 bits (49), Expect = 8.8
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 99  VLSSSLHDWCMTASCAQKYRVHS 167
           +  SSL D+C+ A   Q+Y   S
Sbjct: 9   IYGSSLADYCLNAKYGQRYATFS 31


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,526,419
Number of Sequences: 5004
Number of extensions: 29921
Number of successful extensions: 75
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)