Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_M10
(373 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456... 30 0.67
06_01_1107 + 9120664-9120793,9120882-9121615,9121694-9123069,912... 28 2.0
04_01_0048 + 522423-522552,522641-523374,523453-524828,528100-52... 28 2.7
01_03_0278 - 14509481-14509506,14510700-14512291,14512547-145126... 28 2.7
01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,716... 28 2.7
03_03_0060 - 14157352-14158851 27 4.7
12_01_1111 + 11842837-11843094,11843142-11843255,11843267-118442... 26 8.2
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900... 26 8.2
08_02_1543 + 27783063-27783182,27784321-27784485,27784577-277846... 26 8.2
07_03_1242 + 25113464-25114150 26 8.2
05_04_0395 - 20921606-20921869,20921971-20922112,20922206-209223... 26 8.2
01_01_0638 - 4819365-4819685,4819702-4819882,4820018-4820073,482... 26 8.2
>01_07_0227 +
42144437-42144446,42145059-42145428,42145528-42145649,
42145767-42145935,42146236-42146545,42146742-42146825,
42147012-42147083,42147780-42147821,42147931-42148020,
42148106-42148213,42148292-42148384,42148540-42148619,
42148701-42148953,42151222-42151236
Length = 605
Score = 29.9 bits (64), Expect = 0.67
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 229 CYIREFDGVLPFDSVTYSKEAECTRYFCAH 140
C I+ + +L + SK A+C RYFC H
Sbjct: 182 CLIKMLEEILERAAEISSKLAQCDRYFCGH 211
>06_01_1107 +
9120664-9120793,9120882-9121615,9121694-9123069,
9123152-9123322,9123402-9123702
Length = 903
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 33 VQRMQIVSRFSSVLVKVHTGVSVLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGRTPS 212
V ++++ S+ K H + +L+S+ H A C RVH V E PS
Sbjct: 438 VDHIEVIVVIQSISNKRHLHIPILNSNFHLMQGAAQCVLLARVHPTFAPEVAEGMAFKPS 497
>04_01_0048 +
522423-522552,522641-523374,523453-524828,528100-528400
Length = 846
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/60 (26%), Positives = 25/60 (41%)
Frame = +3
Query: 33 VQRMQIVSRFSSVLVKVHTGVSVLSSSLHDWCMTASCAQKYRVHSASFEYVTESKGRTPS 212
V ++++ S+ K H + +L+S+ H A C RVH V E PS
Sbjct: 438 VDHIEVIVVIRSISNKRHLHIPILNSNFHLMQGAAQCVLLARVHPTFAPEVAEGMAFKPS 497
>01_03_0278 - 14509481-14509506,14510700-14512291,14512547-14512638,
14513030-14514412
Length = 1030
Score = 27.9 bits (59), Expect = 2.7
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 334 SLKTLVFCVCVTLASAAIQRSALEPIPDKFSGLQGCYIRE 215
SL L C C +LAS+++ S P +S LQG I E
Sbjct: 960 SLVKLTLCYCKSLASSSLPNS-----PQAYSSLQGLIIME 994
>01_01_0908 + 7158172-7158356,7159436-7159866,7159953-7161061,
7161372-7162820
Length = 1057
Score = 27.9 bits (59), Expect = 2.7
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +3
Query: 249 LSGIGSKAERWIAAEAKVTQTQKTSVFNDMLVTNHRPAEF 368
LS S A+ W + K+ V D+ +TN PA+F
Sbjct: 1005 LSARNSIAQSWTRGKGKMVHPLDRFVRQDICITNKNPADF 1044
>03_03_0060 - 14157352-14158851
Length = 499
Score = 27.1 bits (57), Expect = 4.7
Identities = 18/47 (38%), Positives = 24/47 (51%)
Frame = -1
Query: 229 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDTP 89
C++R DGV+P +S T E CT + V SC E+ DTP
Sbjct: 251 CFVRSGDGVVP-ESTTTGMEL-CT--IGGNGGVSVGSCWREIVADTP 293
>12_01_1111 +
11842837-11843094,11843142-11843255,11843267-11844247,
11861747-11862025,11862998-11863098,11863723-11863792,
11863947-11863974,11864057-11864114,11864440-11864536
Length = 661
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 282 IAAEAKVTQTQKTSVFNDML 341
+A EAK T+ Q+ V+NDM+
Sbjct: 352 VATEAKETRHQREKVYNDMM 371
>10_05_0085 -
9005539-9005922,9006207-9006463,9006707-9006883,
9007349-9007490,9007814-9007904,9009024-9010942
Length = 989
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 170 FLRVCYRIKGKDTIELPDVTALK 238
+++ C + KGK T+E+P T +K
Sbjct: 928 YIQKCKKAKGKKTLEIPIKTTIK 950
>08_02_1543 +
27783063-27783182,27784321-27784485,27784577-27784686,
27784771-27784876,27784952-27785050,27785450-27786607
Length = 585
Score = 26.2 bits (55), Expect = 8.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = +2
Query: 56 TFFFCFGKGTYRGVCAQLIFTRLVYDSI 139
+F F GT G CA L FTRL+Y S+
Sbjct: 556 SFSFFVLTGTI-GFCACLWFTRLIYSSV 582
>07_03_1242 + 25113464-25114150
Length = 228
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = -1
Query: 202 LPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELSTDT 92
LP V Y C + C+ D IH++C D + DT
Sbjct: 35 LPITGVGY----RCNHHHCS-DFTIHEACADRFARDT 66
>05_04_0395 -
20921606-20921869,20921971-20922112,20922206-20922330,
20922758-20923984
Length = 585
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/38 (28%), Positives = 18/38 (47%)
Frame = -1
Query: 349 FVTNMSLKTLVFCVCVTLASAAIQRSALEPIPDKFSGL 236
F+T + ++FC A + A E +P +F GL
Sbjct: 428 FLTQRTKSKIIFCTAAKSAETLFRYIAPEQVPVQFGGL 465
>01_01_0638 -
4819365-4819685,4819702-4819882,4820018-4820073,
4820107-4820148,4820484-4820639,4820681-4820809,
4821072-4821254,4821374-4821524,4821670-4821848
Length = 465
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = -1
Query: 340 NMSLKTLVFCVCVTLASAAIQRSALE 263
+M LK L+FC+C+ L S I ++LE
Sbjct: 342 SMLLKKLIFCMCI-LCSDMITHTSLE 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,049,139
Number of Sequences: 37544
Number of extensions: 203943
Number of successful extensions: 534
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 522
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 534
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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