Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M07
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    28   1.9  
SPBP19A11.04c |mor2|cps12|morphogenesis protein Mor2|Schizosacch...    27   4.5  

>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 20/65 (30%), Positives = 31/65 (47%)
 Frame = -1

Query: 291 LRELKCWFDSNIPKIIYIYLHLLKNPLPIRYVNKKVLVQQICGLTFFV*LINCLHIKVKF 112
           ++E+     SNI   + +   +L N L +  V KK L  Q   +TF   L+NC  +    
Sbjct: 349 IKEMAIILKSNIDPFLEL---ILPNLLKVCSVTKK-LASQAANVTFAAILVNCGVLSRNL 404

Query: 111 SFASI 97
           SF S+
Sbjct: 405 SFISL 409


>SPBP19A11.04c |mor2|cps12|morphogenesis protein
            Mor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2196

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/40 (42%), Positives = 22/40 (55%)
 Frame = +2

Query: 575  NNCICSKEESRQMTRYYFTDLLERLHILFLYIFINNISMP 694
            N C  SKE S+ ++ YYF  L E L    + I  NN+S P
Sbjct: 1173 NRCF-SKEISQTISNYYFLSLSEML----IQINPNNLSKP 1207


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,283,766
Number of Sequences: 5004
Number of extensions: 67080
Number of successful extensions: 144
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)