Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M07
         (855 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    23   2.7  
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    22   6.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     22   8.3  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 236 IYIF*RILCRYGTLIKRYLYSK 171
           I IF  +L  YG ++  YLY+K
Sbjct: 135 ILIFAEVLGLYGLIVAIYLYTK 156


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
 Frame = -2

Query: 794 RAIEGVNCNKKYQNRTVKASQ*NRQXNLK*E*NT--A*IYYL*KYIEKVYVIVPIDL 630
           + I  ++ N KY N     +  N   N     N     +YY   YIE++ V VP+ +
Sbjct: 313 KIISSLSNNYKYSNYNNYNNNYNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVPVPI 369


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 21.8 bits (44), Expect = 8.3
 Identities = 10/23 (43%), Positives = 11/23 (47%)
 Frame = +3

Query: 3   EHSNVFIIISNNLFRIYKYSLND 71
           EH NVF+  S    R Y   L D
Sbjct: 282 EHQNVFVKNSGQWLREYDRELED 304


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,022
Number of Sequences: 438
Number of extensions: 4761
Number of successful extensions: 32
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27552579
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)