Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M06
         (793 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces pomb...    42   8e-05
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch...    40   3e-04
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   1.8  
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo...    27   4.1  
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    26   7.1  

>SPAP8A3.08 |cdc4||myosin II light chain|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 141

 Score = 42.3 bits (95), Expect = 8e-05
 Identities = 27/92 (29%), Positives = 45/92 (48%)
 Frame = -1

Query: 793 SXYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXEFLPIYSQAKK 614
           S +D  G G+I   ++GDLLRA   NPTLA I                 +FL + ++   
Sbjct: 13  SLFDRHGTGRIPKTSIGDLLRACGQNPTLAEI---TEIESTLPAEVDMEQFLQVLNRPNG 69

Query: 613 DKDQGAYEDFLECLKLYDKNENGLMLGAELTH 518
               G  E+F++  +++DK+  G++   EL +
Sbjct: 70  FDMPGDPEEFVKGFQVFDKDATGMIGVGELRY 101


>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 150

 Score = 40.3 bits (90), Expect = 3e-04
 Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 1/93 (1%)
 Frame = -1

Query: 793 SXYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXE-FLPIYSQAK 617
           S +D +  G I +  LG ++R+L  +PT A +                   FL + ++  
Sbjct: 19  SLFDRDQDGNITSNELGVVMRSLGQSPTAAELQDMINEVDADGNGTIDFTEFLTMMARKM 78

Query: 616 KDKDQGAYEDFLECLKLYDKNENGLMLGAELTH 518
           KD D    E+  E  K++DK+ NG +   ELTH
Sbjct: 79  KDTDNE--EEVREAFKVFDKDGNGYITVEELTH 109



 Score = 32.3 bits (70), Expect = 0.082
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = -2

Query: 525 SHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKV 400
           +H L +LGE+L   EVA++ ++     D DG+I Y  F + +
Sbjct: 108 THVLTSLGERLSQEEVADMIREA--DTDGDGVINYEEFSRVI 147


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = +1

Query: 241  APPEELSPPRALPAPVPQSRASVF*GPSHRT 333
            APP    PP A P P+P S A     P  R+
Sbjct: 1720 APPMPAGPPSAPPPPLPASSAPSVPNPGDRS 1750


>SPBC29A3.11c |||mitochondrial carboxylic acid
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 297

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 13/51 (25%), Positives = 23/51 (45%)
 Frame = +2

Query: 8   FFVFLSXSTSFINQSIIIXKHAQRVXSSLFXLXFVCPVKGRKLYKTVDIML 160
           F V+ S   +F +    +      + +  F   F CP +  KLY  +D++L
Sbjct: 88  FTVYDSLKLTFAHVDPTLRYFISGLGTGTFISLFACPFEYSKLYSQIDMLL 138


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 507 LGEKLDDSEVAEVTKDCMDPED 442
           L EK+ D +   +  DC+DP+D
Sbjct: 777 LAEKVKDFQTMVILLDCLDPKD 798


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,083
Number of Sequences: 5004
Number of extensions: 48620
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)