Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M06
         (793 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1 pro...   109   7e-26
AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal ...    27   0.50 
AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         26   1.2  
AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.7  
AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic acetylch...    24   4.7  
AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic acetylch...    24   6.2  
AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic acetylch...    23   8.2  

>AJ439353-12|CAD27934.1|  160|Anopheles gambiae putative MLC1
           protein protein.
          Length = 160

 Score =  109 bits (263), Expect = 7e-26
 Identities = 53/93 (56%), Positives = 65/93 (69%)
 Frame = -1

Query: 793 SXYDFEGKGKIDAFNLGDLLRALNSNPTLATIXXXXXXXXXXXXXXXXXEFLPIYSQAKK 614
           S YD+EG G++DA +LG+ LRALN NPT+  I                 EFLPI+SQ KK
Sbjct: 18  SVYDWEGSGQMDAMDLGNALRALNLNPTIELIGKMGGTQKRGEKKIKFEEFLPIFSQVKK 77

Query: 613 DKDQGAYEDFLECLKLYDKNENGLMLGAELTHA 515
           +K+QG +EDFLECLKLYDKNE+G ML AELTH+
Sbjct: 78  EKEQGCFEDFLECLKLYDKNEDGTMLLAELTHS 110



 Score = 72.5 bits (170), Expect = 1e-14
 Identities = 33/47 (70%), Positives = 38/47 (80%)
 Frame = -2

Query: 537 LALSSHTLLALGEKLDDSEVAEVTKDCMDPEDDDGMIPYAAFLKKVM 397
           LA  +H+L ALGE+LDD E+  V KDCMDPEDDDG IPYA FLKK+M
Sbjct: 104 LAELTHSLTALGERLDDVELDNVMKDCMDPEDDDGNIPYAPFLKKMM 150


>AY187043-1|AAO39757.1|  171|Anopheles gambiae putative antennal
           carrier protein AP-1 protein.
          Length = 171

 Score = 27.5 bits (58), Expect = 0.50
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 549 TVSCLALSSHTLLALGEKLDDSEVAEVTKDCMDP 448
           T+ C A S   ++      DD    +VT++C+DP
Sbjct: 59  TLKCPAESFKCVIVKNSTKDDVNKVQVTRECLDP 92


>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -2

Query: 504  GEKLDDSEVAEVTKDCMDPEDDDG 433
            G K+++  +AEV K  +D EDD G
Sbjct: 1250 GLKMENGVIAEVEKSQVDGEDDTG 1273


>AY705398-1|AAU12507.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 216 HVDIPYNXLDTDKPLFYTNNII 151
           ++DI +N     K LFYT NII
Sbjct: 230 YLDITFNITMRRKTLFYTVNII 251


>AY705397-1|AAU12506.1|  555|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 4 protein.
          Length = 555

 Score = 24.2 bits (50), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 216 HVDIPYNXLDTDKPLFYTNNII 151
           ++DI +N     K LFYT NII
Sbjct: 230 YLDITFNITMRRKTLFYTVNII 251


>AY705405-1|AAU12514.1|  519|Anopheles gambiae nicotinic
           acetylcholine receptor subunitbeta 1 protein.
          Length = 519

 Score = 23.8 bits (49), Expect = 6.2
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = -2

Query: 222 PSHVDIPYNXLDTDKPLFYT-NNIISTVL 139
           P+  DI +  +   K LFYT N I+ TVL
Sbjct: 217 PTETDITFYIIIRRKTLFYTVNLILPTVL 245


>AY705396-1|AAU12505.1|  710|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 3 protein.
          Length = 710

 Score = 23.4 bits (48), Expect = 8.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -2

Query: 216 HVDIPYNXLDTDKPLFYTNNII 151
           ++DI +N     K LFYT N+I
Sbjct: 226 YLDITFNITMRRKTLFYTVNLI 247


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 701,437
Number of Sequences: 2352
Number of extensions: 12235
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83160600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)