Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M04
         (341 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces po...    24   5.6  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    23   9.8  
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        23   9.8  
SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II comp...    23   9.8  
SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    23   9.8  

>SPBC543.05c |||inorganic anion exchanger |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 24.2 bits (50), Expect = 5.6
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -1

Query: 143 WVCRTVXCTYLFSFK*L*ILFQFG 72
           W+C TV  + LFS+K   +L  +G
Sbjct: 200 WLCDTVGKSSLFSYKVRILLLDYG 223


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = -2

Query: 160 CCQLQNGFVERXHVPIYLVLSNC 92
           CC L  G  +  H PI  V ++C
Sbjct: 794 CCDLYYGSDDYIHSPILQVFASC 816


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
 Frame = -3

Query: 303 RVSVVTCLCGVAPELNQCHFVPGRIQSH-CVSRGSASVGRHL 181
           R+S+V  LC  APEL +   + G+   H   + G   V ++L
Sbjct: 119 RLSIVQLLCDKAPELIRKKDLQGQTPLHRAAAVGKIQVVKYL 160


>SPAC23G3.01 |rpb2|SPAC521.06|DNA-directed RNA polymerase II complex
            subunit Rpb2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1210

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +3

Query: 162  PRPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPEL 272
            P P   ++ G+R Q HAKR+   + L    +G+V ++
Sbjct: 906  PIPLDHEELGQRTQLHAKRD-VSTPLRSTESGIVDQV 941


>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 23.4 bits (48), Expect = 9.8
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = -1

Query: 236 VGYSPIAFRVGLHPSA 189
           V +SP+A R  LHPS+
Sbjct: 152 VYFSPLALRAHLHPSS 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,412,628
Number of Sequences: 5004
Number of extensions: 26170
Number of successful extensions: 55
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 100068878
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)