Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_M04
(341 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0119 + 11485753-11486202 30 0.41
02_03_0050 + 14433013-14433303 29 0.95
01_05_0746 + 24856362-24856710,24856799-24856986 29 0.95
02_02_0123 + 7015905-7015928,7015975-7016105,7017675-7017940,701... 29 1.3
07_03_1031 - 23389263-23389541 27 5.1
03_02_0652 - 10188076-10188243,10188353-10188541,10188633-101887... 27 5.1
02_01_0341 + 2444419-2445495 27 5.1
08_01_0673 - 5805218-5805349,5805936-5806026,5806416-5806471,580... 26 6.7
05_04_0099 - 17991569-17993014 26 6.7
02_05_0486 - 29423756-29423965,29425424-29425528 26 6.7
05_01_0196 + 1415664-1416842 26 8.9
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 26 8.9
02_03_0223 + 16570264-16570357,16570470-16570552,16570974-165710... 26 8.9
02_01_0345 + 2484073-2485152 26 8.9
>04_03_0119 + 11485753-11486202
Length = 149
Score = 30.3 bits (65), Expect = 0.41
Identities = 16/41 (39%), Positives = 18/41 (43%)
Frame = -2
Query: 292 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSPL 170
G ++ WCSS P P A S L C RR SPL
Sbjct: 69 GGMYPWCSSPASPPPSSATSTCTALSPGTSCCRRCRRVSPL 109
>02_03_0050 + 14433013-14433303
Length = 96
Score = 29.1 bits (62), Expect = 0.95
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = -2
Query: 178 SPLGRGCCQLQNGFVERXHVPIYLVLSNCKFCFNLAII 65
S LGR Q Q G V R H P+Y+ S C++ +A +
Sbjct: 19 SSLGRR--QQQQGAVPRGHFPVYVGESRCRYVVPIACL 54
>01_05_0746 + 24856362-24856710,24856799-24856986
Length = 178
Score = 29.1 bits (62), Expect = 0.95
Identities = 13/21 (61%), Positives = 15/21 (71%)
Frame = -2
Query: 241 ARSDTVPLRFAWVCIRRPPSW 179
ARSDT P A VC+RR P+W
Sbjct: 84 ARSDTWPC-LAGVCVRRKPAW 103
>02_02_0123 +
7015905-7015928,7015975-7016105,7017675-7017940,
7018239-7018327,7018716-7018811,7018874-7018969,
7019121-7019251,7020123-7020177,7020645-7020800,
7021238-7021306,7021392-7021499,7022128-7022196,
7022743-7022797,7023031-7023227
Length = 513
Score = 28.7 bits (61), Expect = 1.3
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -3
Query: 252 CHFVPGR--IQSHCVSRGSASVGRHLGRRWGVVAASYKM 142
C ++P R ++S SRG A+ HL RR + A ++M
Sbjct: 106 CRYLPSRCLLRSSRTSRGLAAADLHLARRGEQIRAGWRM 144
>07_03_1031 - 23389263-23389541
Length = 92
Score = 26.6 bits (56), Expect = 5.1
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +3
Query: 129 RSTNPFCSWQQPRPSGDQDGG 191
R+ P+CSWQ S D GG
Sbjct: 3 RTCLPWCSWQLAAASADNSGG 23
>03_02_0652 -
10188076-10188243,10188353-10188541,10188633-10188750,
10188841-10189491,10189870-10190033,10190137-10190574
Length = 575
Score = 26.6 bits (56), Expect = 5.1
Identities = 13/22 (59%), Positives = 14/22 (63%)
Frame = -3
Query: 216 VSRGSASVGRHLGRRWGVVAAS 151
VS G AS+GRHL RR V S
Sbjct: 9 VSAGEASLGRHLARRLVQVGVS 30
>02_01_0341 + 2444419-2445495
Length = 358
Score = 26.6 bits (56), Expect = 5.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = -2
Query: 277 WCSSGTKPVPFCARSDTVPLRFAW 206
W +G +PFC R++ VP W
Sbjct: 216 WSKAGDWALPFCGRAEYVPEHGLW 239
>08_01_0673 -
5805218-5805349,5805936-5806026,5806416-5806471,
5806571-5806852,5806924-5807057,5807088-5807163,
5807247-5807747,5808454-5809037,5809579-5809597
Length = 624
Score = 26.2 bits (55), Expect = 6.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 249 GTGLVPELHHTNTSPQKHDD 308
G G V E+ HT PQ+H D
Sbjct: 3 GGGFVNEMRHTGKRPQQHRD 22
>05_04_0099 - 17991569-17993014
Length = 481
Score = 26.2 bits (55), Expect = 6.7
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = -3
Query: 282 LCGVAPELNQCHFVPGRIQSHCVSRGSASVGRHLG 178
LCGVAPE C G CV S G LG
Sbjct: 150 LCGVAPETAGCARGGGSGDDACVVAASYGAGVALG 184
>02_05_0486 - 29423756-29423965,29425424-29425528
Length = 104
Score = 26.2 bits (55), Expect = 6.7
Identities = 11/18 (61%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Frame = -2
Query: 214 FAWVCIRRP-PSWSPLGR 164
FAW+C+R P P SPL R
Sbjct: 83 FAWLCLRLPLPGCSPLER 100
>05_01_0196 + 1415664-1416842
Length = 392
Score = 25.8 bits (54), Expect = 8.9
Identities = 11/43 (25%), Positives = 19/43 (44%)
Frame = -2
Query: 301 CFCGDVFVWCSSGTKPVPFCARSDTVPLRFAWVCIRRPPSWSP 173
CF W +G +PFC + + VP W + +++P
Sbjct: 229 CFDTVSCSWSHAGDWMLPFCGKGEYVPELKLWFGVSAKNNYAP 271
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 25.8 bits (54), Expect = 8.9
Identities = 13/31 (41%), Positives = 15/31 (48%)
Frame = -2
Query: 292 GDVFVWCSSGTKPVPFCARSDTVPLRFAWVC 200
G V S G VP+ S+ PLRF VC
Sbjct: 459 GAYIVSYSPGMGTVPWIVNSEIYPLRFRGVC 489
>02_03_0223 +
16570264-16570357,16570470-16570552,16570974-16571032,
16571607-16571665,16572276-16572325,16573575-16573612,
16574619-16574695,16575593-16576503
Length = 456
Score = 25.8 bits (54), Expect = 8.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = -2
Query: 190 PPSWSPLGRGCCQLQNGFVER 128
PP+ + L RGCC + F ++
Sbjct: 151 PPTRTKLARGCCSTSSDFAQK 171
>02_01_0345 + 2484073-2485152
Length = 359
Score = 25.8 bits (54), Expect = 8.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -2
Query: 277 WCSSGTKPVPFCARSDTVPLRFAWV 203
W G +PFC R++ VP W+
Sbjct: 214 WSKVGDWALPFCGRAEFVPEHGLWL 238
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,665,411
Number of Sequences: 37544
Number of extensions: 201778
Number of successful extensions: 719
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 711
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 482105440
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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