Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_M04
(341 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical pr... 29 1.2
Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical pr... 28 1.5
Z66567-3|CAA91489.1| 444|Caenorhabditis elegans Hypothetical pr... 28 2.0
U41272-1|AAA82446.2| 584|Caenorhabditis elegans Hypothetical pr... 28 2.0
AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical ... 27 4.7
Z36282-2|CAA85288.3| 240|Caenorhabditis elegans Hypothetical pr... 26 8.1
U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpa... 26 8.1
U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical pr... 26 8.1
U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical pr... 26 8.1
U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical pr... 26 8.1
AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobuli... 26 8.1
>Z83112-1|CAB05538.1| 742|Caenorhabditis elegans Hypothetical
protein K02B7.1 protein.
Length = 742
Score = 28.7 bits (61), Expect = 1.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -2
Query: 187 PSWSPLGRGCCQLQNGFVERXHVPIYLVLSNC 92
P +SP G G C QN ++ H+ +L C
Sbjct: 429 PHYSPKGNGICSRQNRWIFHQHLRFHLDFVRC 460
>Z70212-1|CAA94162.1| 406|Caenorhabditis elegans Hypothetical
protein R04D3.2 protein.
Length = 406
Score = 28.3 bits (60), Expect = 1.5
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +3
Query: 189 GRRMQTHAKRNGTVSDLAQNGTGLVPEL 272
G+R++ HA+ GTV QN TG+V L
Sbjct: 90 GQRLRAHAELGGTVLVTEQNLTGVVESL 117
>Z66567-3|CAA91489.1| 444|Caenorhabditis elegans Hypothetical
protein ZK455.3 protein.
Length = 444
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = -1
Query: 269 LRN*TSAILCQVGYSPIAFRVGLHPSAAILVAAGAWLLPATKWVCRTV 126
+RN T+ ++ + S + F + P A+ AA W+ P +W C +
Sbjct: 73 MRNSTNTLIIGLAISDLMFLLLCVPFTAVDYAAPTWIFP--EWTCSMI 118
>U41272-1|AAA82446.2| 584|Caenorhabditis elegans Hypothetical
protein T03G11.4 protein.
Length = 584
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/46 (39%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
Frame = +3
Query: 174 GDQDG-GRRMQTHAKRNG-TVSDLAQNGTGLVPELHHTNTSPQKHD 305
G Q G R+ A++ G T ++ N TGL PE+ H N P K D
Sbjct: 426 GSQHGFPRKHLDMAEKIGETCHNMYDNPTGLGPEIAHFNMIPGKED 471
>AF067940-6|AAC19205.1| 223|Caenorhabditis elegans Hypothetical
protein F36F12.6 protein.
Length = 223
Score = 26.6 bits (56), Expect = 4.7
Identities = 8/12 (66%), Positives = 10/12 (83%)
Frame = +3
Query: 147 CSWQQPRPSGDQ 182
C+WQ PRPS D+
Sbjct: 199 CTWQDPRPSSDK 210
>Z36282-2|CAA85288.3| 240|Caenorhabditis elegans Hypothetical
protein K10G9.2 protein.
Length = 240
Score = 25.8 bits (54), Expect = 8.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +3
Query: 132 STNPFCSWQQPRPSGDQD 185
S+NPF S++QPR D D
Sbjct: 218 SSNPFTSYRQPRNEFDDD 235
>U88173-4|AAK21386.1| 126|Caenorhabditis elegans Vacuolar h atpase
protein 10 protein.
Length = 126
Score = 25.8 bits (54), Expect = 8.1
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 165 RPSGDQDGGRRMQTHAKRNGTVSDLAQNGTGLVPELHHTNTSPQK 299
R + DQ G + + + L Q + PELHH T +K
Sbjct: 75 RDTEDQISGMKQSVAGNKQAVIVRLLQLVCDIKPELHHNLTLQKK 119
>U58729-3|AAM54204.1| 955|Caenorhabditis elegans Hypothetical
protein F02G3.1c protein.
Length = 955
Score = 25.8 bits (54), Expect = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 236 PGTKWHWFSSG 268
P KWHWF +G
Sbjct: 533 PSPKWHWFKNG 543
>U58729-2|AAM54203.1| 913|Caenorhabditis elegans Hypothetical
protein F02G3.1b protein.
Length = 913
Score = 25.8 bits (54), Expect = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 236 PGTKWHWFSSG 268
P KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516
>U58729-1|AAM54202.1| 928|Caenorhabditis elegans Hypothetical
protein F02G3.1a protein.
Length = 928
Score = 25.8 bits (54), Expect = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 236 PGTKWHWFSSG 268
P KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516
>AF456360-1|AAL60231.1| 928|Caenorhabditis elegans immunoglobulin
domain-containingprotein F02G3.1 protein.
Length = 928
Score = 25.8 bits (54), Expect = 8.1
Identities = 7/11 (63%), Positives = 8/11 (72%)
Frame = +2
Query: 236 PGTKWHWFSSG 268
P KWHWF +G
Sbjct: 506 PSPKWHWFKNG 516
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,095,293
Number of Sequences: 27780
Number of extensions: 160799
Number of successful extensions: 431
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 12,740,198
effective HSP length: 72
effective length of database: 10,740,038
effective search space used: 440341558
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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