Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_M03
         (332 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   0.57 
SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1 |S...    27   0.99 
SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    25   3.0  
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch...    24   5.3  
SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces pom...    24   7.0  
SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   9.2  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    23   9.2  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    23   9.2  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    23   9.2  

>SPCC191.04c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 100

 Score = 27.5 bits (58), Expect = 0.57
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 195 CLCRTLQLPATPFPTFHPYQYLP 127
           C  R +Q    PFP FH Y ++P
Sbjct: 11  CSHRVIQAKHPPFPLFHSYFHIP 33


>SPBC4F6.06 |kin1||microtubule affinity-regulating kinase Kin1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 26.6 bits (56), Expect = 0.99
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +2

Query: 110 ERRAVDGRY**G*NVGKGVAGSCSVRQRHHIRVGRR 217
           ERR V G Y  G  +G G  G   V+  HH++ G +
Sbjct: 117 ERRKVIGNYVLGKTIGAGSMG--KVKVAHHLKTGEQ 150


>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 25.0 bits (52), Expect = 3.0
 Identities = 15/41 (36%), Positives = 19/41 (46%)
 Frame = -1

Query: 218 RGGRPVCGASAVRCNCRLPPFLRFILISTYRLQLCVHRLLP 96
           R G+ V G   V  +  L PF+     ST  L L   RL+P
Sbjct: 286 RNGKGVLGPRVVNLSTVLDPFVLSESASTLNLSLMRWRLVP 326


>SPAC7D4.11c |sec39||secretory pathway protein Sec39
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 769

 Score = 24.2 bits (50), Expect = 5.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 327 EFGRPMSANRVQSNLASDKVSKCL 256
           E G+P+S + V++NL  DK+ K +
Sbjct: 517 EPGKPLSPSLVEANLNPDKLIKTI 540


>SPBC3H7.09 |mug142||palmitoyltransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 350

 Score = 23.8 bits (49), Expect = 7.0
 Identities = 6/20 (30%), Positives = 15/20 (75%)
 Frame = -2

Query: 250 FLITMLALFACAAADPYVVP 191
           + + ++++F C+ ADP ++P
Sbjct: 125 YALAVVSMFKCSTADPGILP 144


>SPAC1F8.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 169 GYPLSYVSSLSVPTVYSSAFTGFYPQIAYAND 74
           G   +YVS+    TV    F+GFY  + Y N+
Sbjct: 17  GINSAYVSNEEGETV-DFTFSGFYANLTYPNE 47


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
            Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 279  SDKVSKCLRRF*SQCWLSSPARRP 208
            ++K+S   R F  QC+   P +RP
Sbjct: 1272 NEKISSLARDFIEQCFERDPEQRP 1295


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 3971

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 181 AATAGYPLSYVSSLSVPTVYSSA 113
           AATA +  + VSS  + T Y+SA
Sbjct: 170 AATASFSYTNVSSSVIATAYTSA 192


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.4 bits (48), Expect = 9.2
 Identities = 13/31 (41%), Positives = 15/31 (48%)
 Frame = -3

Query: 177 QLPATPFPTFHPYQYLPSTALRSPASTHKSH 85
           Q P +P P+  P    PSTA    AS H  H
Sbjct: 97  QSPTSPHPSNQPAMLSPSTA----ASQHHHH 123


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,369,437
Number of Sequences: 5004
Number of extensions: 26082
Number of successful extensions: 70
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 93942212
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)