Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L24
         (422 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun...    26   2.8  
SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   4.8  
SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    24   8.5  

>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
           Alg2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 511

 Score = 25.8 bits (54), Expect = 2.8
 Identities = 9/19 (47%), Positives = 16/19 (84%)
 Frame = +3

Query: 294 CMLSASFLTFSIASKLSXI 350
           C++S SFLTF++ +KL+ +
Sbjct: 493 CIVSVSFLTFTVYAKLTNL 511


>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.0 bits (52), Expect = 4.8
 Identities = 11/39 (28%), Positives = 23/39 (58%)
 Frame = +1

Query: 28  LFL*VNNKPYINEKIRVIDSNHKIVFRTLFYYIKI*KDT 144
           LFL + N+P   +++    S+++++   LF ++K   DT
Sbjct: 358 LFLLLTNQPRFTDELVNFKSSNEMMMNLLFIHVKYSGDT 396


>SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 475

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 245 LASWKRLYDNSNYFNLLYA*CEFFNVLD 328
           LAS+ R+   S   NLL+A C+  +++D
Sbjct: 363 LASFNRIKSFSTDLNLLHAACKASDIID 390


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,555,023
Number of Sequences: 5004
Number of extensions: 27513
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)