Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L24
         (422 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine...    30   0.79 
AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholin...    30   0.79 
Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical pr...    28   3.2  
Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical pr...    27   4.2  
Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical pr...    27   4.2  
X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.        26   9.7  
U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical pr...    26   9.7  
U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of l...    26   9.7  
U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of l...    26   9.7  
U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of l...    26   9.7  

>AY519853-1|AAR89634.1|  545|Caenorhabditis elegans acetylcholine
           receptor (62.5 kD)(acr-23) protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 214 NEGLLVRCFF*NIFMALFILPVKMYPFIFLYNRITFETRSYDLNL*LLFSR*YT 53
           N+G +V   +  I+    +L +K +PF     R+TF + S+D +L   F R +T
Sbjct: 140 NQGAMVELLYPTIYKISCLLNLKYFPFDTQTCRMTFGSWSFDNSLIDYFPRTFT 193


>AF067943-10|AAC17666.3|  545|Caenorhabditis elegans Acetylcholine
           receptor protein 23 protein.
          Length = 545

 Score = 29.9 bits (64), Expect = 0.79
 Identities = 17/54 (31%), Positives = 29/54 (53%)
 Frame = -2

Query: 214 NEGLLVRCFF*NIFMALFILPVKMYPFIFLYNRITFETRSYDLNL*LLFSR*YT 53
           N+G +V   +  I+    +L +K +PF     R+TF + S+D +L   F R +T
Sbjct: 140 NQGAMVELLYPTIYKISCLLNLKYFPFDTQTCRMTFGSWSFDNSLIDYFPRTFT 193


>Z98851-1|CAB11539.2|  327|Caenorhabditis elegans Hypothetical
           protein H12I19.1 protein.
          Length = 327

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 11/37 (29%), Positives = 22/37 (59%)
 Frame = -2

Query: 214 NEGLLVRCFF*NIFMALFILPVKMYPFIFLYNRITFE 104
           +EG+L+   +  IF+ LF+  + ++PF    N++  E
Sbjct: 18  DEGILLSVLYVLIFIILFLFYILVFPFYVYVNKVNKE 54


>Z69665-1|CAA93520.5| 1396|Caenorhabditis elegans Hypothetical protein
            ZK897.1 protein.
          Length = 1396

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
 Frame = +2

Query: 140  IHFNWQNE*SHKYI-LKKASY**TFVSTD*TCCITALASWKRLYDNSNYFNLLYA*CEFF 316
            I  NW  E   KY+  K  S     +S    C  TA  SW +    S  + L    C   
Sbjct: 1118 IDLNWPEEDFRKYLQTKMKSLTSDMISKVSDCTFTAFDSWMQRAKKSTDYMLPSEVCVQI 1177

Query: 317  NVLDSVKVKPXKYAV 361
            NV+ S K +  +  V
Sbjct: 1178 NVMFSSKSRAVRVTV 1192


>Z98860-1|CAB11544.1|  677|Caenorhabditis elegans Hypothetical
           protein Y26G10.1 protein.
          Length = 677

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = -1

Query: 206 FTSKMLFLKYIYGSIHFAS*NVSFYIFI**NNVRNTIL*FESITLIFSLIYGLLLTYRNK 27
           F+++M+FL      IHFA+  VS ++F      R  IL   S+    + I  ++L   ++
Sbjct: 539 FSAEMIFLMAFNRCIHFAAKPVSLWVF-----TRARILFLVSLCAFLASIAAVILIQTSE 593

Query: 26  LNEVLL 9
           L  + +
Sbjct: 594 LRRIYI 599


>Z93383-6|CAB07623.1|  283|Caenorhabditis elegans Hypothetical
           protein F54B8.6 protein.
          Length = 283

 Score = 27.5 bits (58), Expect = 4.2
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 151 VKMYPFIFLYNRITFETRSYDLNL*LLFSR*YTVYY 44
           VK   FI +Y  + F+T  Y L   + F R   +Y+
Sbjct: 77  VKNLAFILIYPFLVFDTMRYTLGFLITFDRFIAIYF 112


>X89223-1|CAA61507.1|  582|Caenorhabditis elegans sli-1 protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 KPXKYAVGTAPPSGKRTRTIPLHTSM 418
           +P ++A+G   P GK  +TIP + S+
Sbjct: 308 RPGQWAIGYVAPDGKIYQTIPQNKSL 333


>U80447-3|AAB37807.2|  910|Caenorhabditis elegans Hypothetical
           protein F55F8.3 protein.
          Length = 910

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 20/53 (37%), Positives = 26/53 (49%)
 Frame = -2

Query: 244 SSDAACLVSGNEGLLVRCFF*NIFMALFILPVKMYPFIFLYNRITFETRSYDL 86
           S DA  LVSG E  +VR      F  LFI P+  +   ++ N   F   SYD+
Sbjct: 155 SDDANLLVSGGEDRVVRVVGAKDFKNLFIHPLASHKG-YIVN-CQFMKNSYDM 205


>U58730-5|AAK84546.1|  582|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform a protein.
          Length = 582

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 KPXKYAVGTAPPSGKRTRTIPLHTSM 418
           +P ++A+G   P GK  +TIP + S+
Sbjct: 308 RPGQWAIGYVAPDGKIYQTIPQNKSL 333


>U58730-4|AAK84547.1|  565|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform b protein.
          Length = 565

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 KPXKYAVGTAPPSGKRTRTIPLHTSM 418
           +P ++A+G   P GK  +TIP + S+
Sbjct: 291 RPGQWAIGYVAPDGKIYQTIPQNKSL 316


>U58730-3|AAT92069.1|  523|Caenorhabditis elegans Suppressor of
           lineage defect protein1, isoform c protein.
          Length = 523

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +2

Query: 341 KPXKYAVGTAPPSGKRTRTIPLHTSM 418
           +P ++A+G   P GK  +TIP + S+
Sbjct: 291 RPGQWAIGYVAPDGKIYQTIPQNKSL 316


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,340,845
Number of Sequences: 27780
Number of extensions: 145131
Number of successful extensions: 319
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 319
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)