Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_L21
(353 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1 |Schizosac... 47 7e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 27 0.85
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 26 1.5
SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase Pmp1|... 25 4.5
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa... 25 4.5
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 25 4.5
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 24 6.0
SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharo... 24 7.9
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch... 24 7.9
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|... 24 7.9
SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr 1|||M... 24 7.9
>SPBC27.06c |mgr2||mitochondrial membrane protein Mgr1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 120
Score = 47.2 bits (107), Expect = 7e-07
Identities = 21/49 (42%), Positives = 30/49 (61%)
Frame = -1
Query: 200 PSCFDKMKMGFMIGFCVGMASGGLFGGFTALRYGARGKELVHSVGKVML 54
PS DK+KMG ++G G+ G LFGG LRYG + + ++G+ ML
Sbjct: 6 PSTVDKLKMGAIMGSAAGLGIGFLFGGVAVLRYGPGPRGFLRTLGQYML 54
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 27.1 bits (57), Expect = 0.85
Identities = 15/45 (33%), Positives = 24/45 (53%)
Frame = +1
Query: 97 APYLNAVNPPKRPPLAIPTQKPIIKPIFILSKHEGPWL**TAPGT 231
AP L+ +NP PP PTQ+ ++P ++ P++ PGT
Sbjct: 450 APALS-MNPSSLPPWQQPTQQSAVQPSNLVPSQNAPFI----PGT 489
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 26.2 bits (55), Expect = 1.5
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 55 SITFPTECTNSFPLAPYLNAVNPPKRPPLAIPT 153
S+ P E + + P +A PKR P A PT
Sbjct: 416 SVNAPAETQDKSTVVPQESATATPKRSPSATPT 448
>SPBC1685.01 |pmp1||dual-specificity MAP kinase phosphatase
Pmp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 278
Score = 24.6 bits (51), Expect = 4.5
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +3
Query: 84 LFPPCSIP*CSKSAEKTSTSHPY 152
LF PC +P A K +++ PY
Sbjct: 35 LFTPCPVPPSFPKASKPNSNQPY 57
>SPCC18B5.03 |wee1||dual specificity protein kinase
Wee1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 877
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/32 (43%), Positives = 16/32 (50%)
Frame = +1
Query: 79 TNSFPLAPYLNAVNPPKRPPLAIPTQKPIIKP 174
+NSF L P NPP L P Q+ IKP
Sbjct: 346 SNSFSLFPNATLPNPPSSELLTTPFQQ--IKP 375
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 24.6 bits (51), Expect = 4.5
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +2
Query: 176 FSFYQ-NTKVLGCDKQHPVQAF*IKLFVSYSCPLAIQS 286
FSFY + V+G K +QA + + S SCP + S
Sbjct: 341 FSFYSLPSTVIGNPKYKDIQAAYLYYYASDSCPKDLSS 378
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 24.2 bits (50), Expect = 6.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 230 VPGAVYHNQGPSCFDKMKMGFMIGFCV 150
VP A+ + +K+GFM+G C+
Sbjct: 468 VPFAIIKLYFAQTYSSVKLGFMLGTCI 494
>SPBC4C3.08 |mug136||acetylglucosaminyltransferase|Schizosaccharomyc
es pombe|chr 2|||Manual
Length = 372
Score = 23.8 bits (49), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +3
Query: 42 PPPXKHYFSNGMY*LFPP 95
PPP K YF+ G++ +F P
Sbjct: 251 PPPFKDYFNAGLF-VFKP 267
>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 207
Score = 23.8 bits (49), Expect = 7.9
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 145 IPTQKPIIKPIFILSKHEGPWL 210
IP+Q+ IKP F E PW+
Sbjct: 145 IPSQQRSIKPPFHPMNEEQPWI 166
>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 397
Score = 23.8 bits (49), Expect = 7.9
Identities = 13/45 (28%), Positives = 23/45 (51%)
Frame = +1
Query: 31 SQMCLHLXSITFPTECTNSFPLAPYLNAVNPPKRPPLAIPTQKPI 165
+Q+C + + T S + P LN+ + R PL++PT P+
Sbjct: 134 NQVCSYCEPLPNHLTKTKSCSIPPILNSSD---RSPLSLPTPYPV 175
>SPAC4G9.15 |||ketoreductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 23.8 bits (49), Expect = 7.9
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = +1
Query: 76 CTNSFPLAPYLNAVNPPKRPPLAIPTQKPIIK 171
C NS+ + ++A++ +RP L IPT K ++
Sbjct: 243 CFNSYLV---VSAMSKVRRPTLTIPTPKKFVR 271
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,198
Number of Sequences: 5004
Number of extensions: 31281
Number of successful extensions: 93
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 93
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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