Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L19
         (796 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    27   2.3  
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    26   7.1  
SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|c...    26   7.1  

>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -2

Query: 642 IILKNLLWISNIYKIENTSSVNLFRTKYFVVLFKTE 535
           I+LK L W      I +  SVN    +YF  ++K E
Sbjct: 778 ILLKLLSWNVKFCSISDAGSVNNLLQQYFTAIYKFE 813


>SPBC12C2.02c |ste20|ste16|sterility protein
           Ste20|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1309

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 642 IILKNLLWISNIYKIENTSSVNLFRTKYFV 553
           I+ K+LL  ++ Y+IE   +  L RT YF+
Sbjct: 303 ILSKSLLSGTDAYQIEREQAFRLIRTLYFL 332


>SPAC1952.09c |||acetyl-CoA hydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 7.1
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +3

Query: 285 CQS*IGKPKNSGSLSKYLKLFQLQVSRGTETFIFGYFSSIR 407
           C   +GKP + G  S  ++ F   +S   +  ++GY++  R
Sbjct: 94  CPHQVGKPISKGINSGRIQFFDKHLSMFPQDLLYGYYTRNR 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,639,536
Number of Sequences: 5004
Number of extensions: 49791
Number of successful extensions: 102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)