Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L17
         (565 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153     65   3e-11
12_02_0358 - 17948460-17948687,17949442-17949534                       64   6e-11
10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031     64   6e-11
07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635     62   2e-10
05_05_0195 + 23142830-23143714,23144288-23144314,23144657-231448...    29   2.6  
06_01_0474 - 3362734-3362827,3363179-3363366,3363458-3363700,336...    28   5.9  

>11_06_0058 - 19688221-19688448,19688899-19688949,19689061-19689153
          Length = 123

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 28/70 (40%), Positives = 43/70 (61%)
 Frame = -2

Query: 357 RDLLELQVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVI 178
           R  L    +N+     +DR ++TG H V D+ C++C   LGW YE A EE+Q+YKEG+ I
Sbjct: 53  RAFLFSHAMNISMGPKEDRQLMTGLHTVADIYCRDCREVLGWKYERAFEESQKYKEGKFI 112

Query: 177 LERALVTESD 148
            E+A + + +
Sbjct: 113 FEKAKIVKEN 122


>12_02_0358 - 17948460-17948687,17949442-17949534
          Length = 106

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 27/70 (38%), Positives = 42/70 (60%)
 Frame = -2

Query: 357 RDLLELQVVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVI 178
           R  L    +N++    +DR ++TG H V D+ C +C   LGW YE A EE Q+YKEG+ I
Sbjct: 36  RAFLFSHAMNVVVGAKEDRQLMTGLHTVADIYCNDCREVLGWKYERAYEETQKYKEGKFI 95

Query: 177 LERALVTESD 148
            E++ + + +
Sbjct: 96  FEKSKIVKEN 105


>10_06_0133 - 11081169-11081252,11082857-11082965,11083865-11084031
          Length = 119

 Score = 64.5 bits (150), Expect = 6e-11
 Identities = 28/57 (49%), Positives = 39/57 (68%)
 Frame = -2

Query: 336 VVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERA 166
           VVN+     +DR ++TG H V+D+ C  C   LGW YE A EE+++YKEG+ ILE+A
Sbjct: 56  VVNISLGPNEDRYLMTGLHTVKDIYCSCCQQILGWRYEKAYEESEKYKEGKFILEKA 112


>07_03_1056 + 23619815-23619957,23621080-23621188,23622555-23622635
          Length = 110

 Score = 62.5 bits (145), Expect = 2e-10
 Identities = 27/59 (45%), Positives = 39/59 (66%)
 Frame = -2

Query: 336 VVNLIYSEVQDRVMLTGRHMVRDVSCKNCGTKLGWVYEFATEENQRYKEGRVILERALV 160
           VVN+     +DR+++TG H V D+ C  C   LGW YE A  E+Q+YKEG+ ILE+ ++
Sbjct: 48  VVNVSLGPREDRLLMTGLHTVNDIYCSCCQRLLGWRYEKAYSEDQKYKEGKYILEKHMM 106



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = -1

Query: 454 MGKIFLDHIGGTRLFSCASCDVNLTNRSELISTRFTGATGCESNLFGS 311
           MG +F++ + G ++F C  C V+  +   ++S  F G  G  + LF S
Sbjct: 1   MGLLFVESLPGPKVFKCKFCGVDSASPDAIVSKEFRGRHG-RAYLFDS 47


>05_05_0195 +
           23142830-23143714,23144288-23144314,23144657-23144866,
           23144976-23145242,23146290-23146376,23146495-23146553,
           23147166-23147768,23148063-23148192,23148570-23149100,
           23149636-23149743,23149911-23150456,23150957-23151079,
           23151494-23151709
          Length = 1263

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 15/34 (44%), Positives = 22/34 (64%)
 Frame = +3

Query: 252 SSYKKHHAPCDVLLASHDPELPNRLDSQPVAPVN 353
           S+ K  HAPC    AS  P LP+RL ++P+A ++
Sbjct: 517 SAAKMSHAPCRNA-ASFKPLLPSRLRAKPLAGIS 549


>06_01_0474 -
           3362734-3362827,3363179-3363366,3363458-3363700,
           3363820-3364098,3364189-3364386,3364475-3365110,
           3365209-3365463,3365579-3365685,3365770-3369566,
           3369677-3370166,3370918-3371308,3371481-3371573,
           3371687-3371810,3372544-3372791
          Length = 2380

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 16/67 (23%), Positives = 27/67 (40%)
 Frame = +3

Query: 225 HIPNPASYRSSYKKHHAPCDVLLASHDPELPNRLDSQPVAPVNRVLINSERFVRLTSHDA 404
           H+ N    +     +H P  + + + DP+LP       + P+        R  R T  D 
Sbjct: 329 HLYNNRPRKVRLGVYHTPMIMYIKTEDPDLPAFYYDPLINPITSTNKVDRRERRTTEEDE 388

Query: 405 HENSRVP 425
            E+ R+P
Sbjct: 389 DEDFRLP 395


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,957,949
Number of Sequences: 37544
Number of extensions: 217366
Number of successful extensions: 679
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1293275844
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)