Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L16
         (750 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...   106   1e-23
U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal prote...   106   2e-23
Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical pr...    31   0.87 
Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical pr...    31   0.87 
X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.       31   0.87 
X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.       31   0.87 
AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical ...    29   3.5  
U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical pr...    29   4.7  
U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical pr...    28   8.1  
AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical ...    28   8.1  

>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score =  106 bits (255), Expect = 1e-23
 Identities = 49/91 (53%), Positives = 66/91 (72%)
 Frame = -2

Query: 416 VTKALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNII 237
           V KA++A++ VVKG      + +R SVHFRRPKT    R P+Y RKS P R+++D++ +I
Sbjct: 8   VGKAIQAKKAVVKGSKTNVRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDSFAVI 67

Query: 236 KFPLTSEAAMKKIEDNNTLXFIVHTSANKHH 144
           K P T+E++MKKIED+NTL FIV   ANKHH
Sbjct: 68  KAPHTTESSMKKIEDHNTLVFIVDEKANKHH 98


>U40948-2|AAA81728.1|  147|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 25.1 protein.
          Length = 147

 Score =  106 bits (254), Expect = 2e-23
 Identities = 49/88 (55%), Positives = 66/88 (75%)
 Frame = -2

Query: 410 KALKAQRKVVKGEHGKRVRKIRNSVHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKF 231
           KAL A++KVVKG+     R++R SVHFRRP T +  R  ++PRKS PK ++MD + II+ 
Sbjct: 11  KALDAKKKVVKGKRTTHRRQVRTSVHFRRPVTLKTARQARFPRKSAPKTSKMDHFRIIQH 70

Query: 230 PLTSEAAMKKIEDNNTLXFIVHTSANKH 147
           PLT+E+AMKKIE++NTL FIV   ANK+
Sbjct: 71  PLTTESAMKKIEEHNTLVFIVSNDANKY 98


>Z50873-2|CAA90759.2|  620|Caenorhabditis elegans Hypothetical
           protein F17E5.1b protein.
          Length = 620

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 386 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 210
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 209 MKKIEDNNTLXFIVH 165
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>Z50873-1|CAA90760.2|  961|Caenorhabditis elegans Hypothetical
           protein F17E5.1a protein.
          Length = 961

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 386 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 210
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 209 MKKIEDNNTLXFIVH 165
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>X92565-1|CAA63315.1|  620|Caenorhabditis elegans LIN-2B protein.
          Length = 620

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 386 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 210
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 437 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 490

Query: 209 MKKIEDNNTLXFIVH 165
           M  I++N  L +  H
Sbjct: 491 MADIQNNEYLEYGTH 505


>X92564-1|CAA63314.1|  961|Caenorhabditis elegans LIN-2A protein.
          Length = 961

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = -2

Query: 386 VVKGEHGKRVRKIRNSVHFRRPKTFE-PPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAA 210
           V+ G HG   R I+N++  R P  F  P  H   P    P+++ +D  +   + +T+E  
Sbjct: 778 VLLGAHGVGRRHIKNTLIHRHPNRFAYPIPHTTRP----PRKDEVDGKHY--YFVTNEQM 831

Query: 209 MKKIEDNNTLXFIVH 165
           M  I++N  L +  H
Sbjct: 832 MADIQNNEYLEYGTH 846


>AC024797-3|AAF60706.1|  112|Caenorhabditis elegans Hypothetical
           protein Y48G8AR.3 protein.
          Length = 112

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -2

Query: 338 VHFRRPKTFEPPRHPKYPRKSLPKRNRMDAYNIIKFPLTSEAAM 207
           + FRR  +    RH    R+++P ++      I KFP  SE A+
Sbjct: 1   MEFRRKCSRSAMRHKSQKRRAMPNQDVEKVNEIFKFPRISEQAL 44


>U41541-3|AAK18894.1| 7829|Caenorhabditis elegans Hypothetical protein
            C41A3.1 protein.
          Length = 7829

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = +3

Query: 357  YSLPMFTFYNLPLSLKCFSNRFHYFF 434
            +S  +  FYNL L  KCFS  FH+ F
Sbjct: 3293 FSKKVTFFYNL-LQSKCFSKHFHWLF 3317


>U41009-8|AAA82282.2|  500|Caenorhabditis elegans Hypothetical
           protein C06E7.4 protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = -2

Query: 419 PVTKALKAQRKVVKGEHGKRVRKI-RNSVHFRRPKTFEPPRHPKYPR 282
           P  K LK   K+ K +H K ++K+    +  + P    PP HP Y R
Sbjct: 111 PDAKTLKKLEKMEK-KHQKLMKKLGARGIPIQMPVPPPPPMHPMYSR 156


>AL021481-5|CAA16336.2|  455|Caenorhabditis elegans Hypothetical
           protein Y43F4B.7 protein.
          Length = 455

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 22/81 (27%), Positives = 33/81 (40%)
 Frame = +3

Query: 93  LPXATFXSXRFLXAALXMVLVCTCVXNKXQGVVIFNLLHCCFRREXEFNDVVGIHAISLR 272
           LP A   S  FL   L +++   C+    Q  V+F     C R   +  D   I   ++ 
Sbjct: 70  LPLAFKHSGLFLGLILTVLICLICLYCMRQ--VVFAAHFVCNRNGRDLIDYANIMRGAVE 127

Query: 273 QRLPWVFRVPRRFKRLGSAEM 335
              PW+ R    FK+L +  M
Sbjct: 128 MGPPWIKRNGYFFKQLVNVNM 148


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,070,609
Number of Sequences: 27780
Number of extensions: 196800
Number of successful extensions: 656
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)