Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_pT_L15
(808 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 28 1.4
SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr 2... 27 3.1
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 27 3.1
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch... 27 4.1
SPAC20G4.04c |hus1||checkpoint clamp complex protein Hus1|Schizo... 26 5.5
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 5.5
SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces pomb... 26 7.2
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|... 26 7.2
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k... 26 7.2
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S... 26 7.2
SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog Chs2|Schiz... 26 7.2
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 28.3 bits (60), Expect = 1.4
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 390 WPVKKKTVFGSSIIKGGNLC 331
W KT+ G I+KGG LC
Sbjct: 51 WRAHTKTILGMQIVKGGALC 70
>SPBC211.05 |||splicing factor 3B|Schizosaccharomyces pombe|chr
2|||Manual
Length = 85
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Frame = +1
Query: 604 EWL---YRPWTSTMLGTKPTRCLPSSNLHKPRLKKNKSLAQNVYLPLG 738
EW+ +R S+++G P ++ L +PR++ K+L + + +P G
Sbjct: 30 EWMVNQHRDTLSSVVGHPPLLAYMATALGEPRVQVRKNLLEKMIMPCG 77
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 27.1 bits (57), Expect = 3.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -2
Query: 399 FLEWPVKKKTVFGSSIIKGGNLCIWTKKNVIDMSIQ 292
F+EW V ++G+SI+ L KK ++D+ +Q
Sbjct: 84 FVEWAVFSGNMYGTSIMAIQELEAVNKKAILDIDLQ 119
>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1318
Score = 26.6 bits (56), Expect = 4.1
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Frame = +2
Query: 233 LLNA-GFEPYSLKETMIFHSICIDISITF 316
LLNA FEP +LK +F IC D SI F
Sbjct: 246 LLNAISFEPINLKAIPLFFIICAD-SINF 273
>SPAC20G4.04c |hus1||checkpoint clamp complex protein
Hus1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 287
Score = 26.2 bits (55), Expect = 5.5
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = +1
Query: 661 LPSSNLHKPRLKKNKSLAQNVYLPLGLSGIKYLSFSTQNPRFSAKY 798
LP N + + K KSL+ + + +SG LS + + R S K+
Sbjct: 154 LPQLNFLRHVVDKYKSLSDRIIMSANMSGELQLSVNIPSARVSTKW 199
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 5.5
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 421 SNIKQSVLLAAHRDTTVAVW 480
+NI QSVL+A+ R++ AVW
Sbjct: 447 ANIDQSVLMASVRESLPAVW 466
>SPBC56F2.01 |pof12||F-box protein Pof12|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 440
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 268 GDDDLPFNLY*HINNIFFCPNAQITTFDN 354
G+D L L H NNI+FC + QI+ + +
Sbjct: 110 GEDRLGLTLT-HQNNIYFCNDVQISKWSS 137
>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 537
Score = 25.8 bits (54), Expect = 7.2
Identities = 15/43 (34%), Positives = 23/43 (53%)
Frame = +2
Query: 680 TSLV*RRTSHWRKMCTFRLAFRGLNIFLLAHKIHDFLQNTXEL 808
TSLV R RK+ RLAFR + L+ + + ++ + EL
Sbjct: 140 TSLVTRVKELARKLSAARLAFRFRKVLLICNDNKESIERSVEL 182
>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 836
Score = 25.8 bits (54), Expect = 7.2
Identities = 20/47 (42%), Positives = 23/47 (48%)
Frame = -2
Query: 213 YLSKMSFRRVLCLPMEYKVNNSFF*FTNNCPKVTLPALIIVDSFVTQ 73
YLS FR LC+ E +N F N K LP LI+V SF Q
Sbjct: 583 YLSHFDFRGHLCIVTELLGSNLFDVIRENNYK-GLP-LIVVKSFALQ 627
>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
Length = 957
Score = 25.8 bits (54), Expect = 7.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +2
Query: 251 EPYSLKETMIFHSICIDISITFFFVQMHRLPPLIIDDP 364
E YSL E++I + + ++ F Q H+LP + P
Sbjct: 725 EGYSLAESVISECMILAGRVSSLFFQEHKLPGIFRGQP 762
>SPBC1709.01 |chs2|SPBC1734.17|chitin synthase homolog
Chs2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 926
Score = 25.8 bits (54), Expect = 7.2
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = +2
Query: 491 IFIMNKLDKLIYLYFKFTICVFY--LLPL*AHELTAHLMVNGY 613
+FI L +I +YF F CVFY L+PL + + ++ N Y
Sbjct: 672 LFISTALFSIIMIYFVF--CVFYISLIPLHNSDNSEIVLGNNY 712
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,339,754
Number of Sequences: 5004
Number of extensions: 70912
Number of successful extensions: 171
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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