Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L15
         (808 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   0.62 
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   2.5  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.4  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    23   4.4  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 0.62
 Identities = 8/28 (28%), Positives = 17/28 (60%)
 Frame = -2

Query: 396 LEWPVKKKTVFGSSIIKGGNLCIWTKKN 313
           + WPVKK+ V    ++ GG + +  +++
Sbjct: 103 MSWPVKKEAVVEGDLVLGGLMMVHERQD 130


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = -2

Query: 360 SSIIKGGNLCIWTKKNVIDMSIQIEWKIIVSFKE 259
           S  ++ G +C+  K+N ID  I++      SF +
Sbjct: 506 SKWVQKGQICLKEKENEIDFKIEVTEDCNKSFND 539


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 7/39 (17%), Positives = 19/39 (48%)
 Frame = +1

Query: 607 WLYRPWTSTMLGTKPTRCLPSSNLHKPRLKKNKSLAQNV 723
           +++ PW + +   +  +C+   +   P +  +KS   N+
Sbjct: 460 YIHEPWNAPLNVQRAAKCIIGKDYSLPMVNHSKSSRINI 498


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 22.6 bits (46), Expect = 4.4
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 290 ICIDISITFFFVQMHRLPPLIIDDPNTVFFFTGHSRKI 403
           + + IS   F++ M   PP I+   NT+  F   + K+
Sbjct: 244 LIVVISWVSFWLHMDASPPRIVLGTNTILTFMTLASKV 281


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,377
Number of Sequences: 438
Number of extensions: 5029
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25610547
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)