Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L14
         (854 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical p...   320   8e-88
AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical...    56   3e-08
AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and...    56   3e-08
Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical pr...    36   0.037
AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical ...    29   3.2  
U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like pr...    28   7.4  

>U23139-15|AAK31488.1|  387|Caenorhabditis elegans Hypothetical
           protein F13H8.7 protein.
          Length = 387

 Score =  320 bits (786), Expect = 8e-88
 Identities = 151/275 (54%), Positives = 190/275 (69%), Gaps = 9/275 (3%)
 Frame = -3

Query: 801 SIREQREAIFTKIEKIINTAASEGVQIICLEETWSMPFFLCTREKEKWDEFAESATEGPS 622
           S+ EQR+AI  ++  +I  AAS G  +I L+E W+MPF  CTRE+  W EFAES   GP+
Sbjct: 90  SVVEQRDAIHQRVGAMIEAAASAGANVIGLQEAWTMPFAFCTRERLPWTEFAESVYTGPT 149

Query: 621 VIFLKDLARKYGLVIVSPILEKDDV--GTWWNTAVVIDEEGNVLGKHRKNHLPSVGSFSE 448
             FL  LA K+ +VI+SPILE+D+      WNTAVVI   G V+G+ RKNH+P VG F+E
Sbjct: 150 TQFLSKLAVKHDIVIISPILERDEEKDDVIWNTAVVISHTGRVIGRSRKNHIPRVGDFNE 209

Query: 447 TPYYAPGNMGHPVFDTKYAKIAVNICYGRHQALNWLMLGLNGAEIVFNPSATVAEFGESF 268
           + YY    +GHPVF+TKY +I +NICYGRH   NW+M  LNGAEI+FNPSATV    E  
Sbjct: 210 STYYMESTLGHPVFETKYGRIGINICYGRHHPQNWMMYALNGAEIIFNPSATVGALSEPL 269

Query: 267 WNIEARNAAIANGYFTCSINRVGTETF-NSTSGGTIERT------YYGSSYVTAPNGCRT 109
           W IEARNAAIAN  FT  INRVGTE F N  + G  +        +YGSSY+ AP+G RT
Sbjct: 270 WGIEARNAAIANHVFTVGINRVGTEVFPNEFTSGNGQPAHKDFGHFYGSSYIAAPDGSRT 329

Query: 108 PALSRLRDGLMIVEIDLNLNRQVRDQWGFNMTXKV 4
           PALSR+R+G++I E+DLNL RQ +D WGF MT ++
Sbjct: 330 PALSRVREGVLIAELDLNLCRQCKDAWGFRMTNRL 364


>AL132860-11|CAB60517.1|  440|Caenorhabditis elegans Hypothetical
           protein Y56A3A.13 protein.
          Length = 440

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 9/259 (3%)
 Frame = -3

Query: 783 EAIFTKIEKIINTAASEGVQIICLEETWSMPFFLCTREKEKWDEFAESATEGPSVIFLKD 604
           E  F   + +I  A  +  +++ L E +    F+   + E+ D     AT+   +   ++
Sbjct: 29  EKNFQAAKNMIERAGEKKCEMVFLPECFD---FIGLNKNEQID--LAMATDCEYMEKYRE 83

Query: 603 LARKYGLVI-VSPILEKD--DVGTWWNTAVVIDEEGNVLGKHRKNHL-----PSVGSFSE 448
           LARK+ + + +  +  KD  D    WNT ++ID +G    ++ K HL     P      E
Sbjct: 84  LARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLME 143

Query: 447 TPYYAPGNMGHPVFDTKYAKIAVNICYG-RHQALNWLMLGLNGAEIVFNPSATVAEFGES 271
           + +   G    P  DT   ++ ++ICY  R   L+ L     GA+++  PSA     G +
Sbjct: 144 SEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELS-LWNRKRGAQLLSFPSAFTLNTGLA 202

Query: 270 FWNIEARNAAIANGYFTCSINRVGTETFNSTSGGTIERTYYGSSYVTAPNGCRTPALSRL 91
            W    R  AI N  +  +  + G            +R  YG S V  P G      S  
Sbjct: 203 HWETLLRARAIENQCYVVAAAQTGAH--------NPKRQSYGHSMVVDPWGAVVAQCSE- 253

Query: 90  RDGLMIVEIDLNLNRQVRD 34
           R  +   EIDL+    +R+
Sbjct: 254 RVDMCFAEIDLSYVDTLRE 272


>AF069986-1|AAC39136.1|  440|Caenorhabditis elegans nitrilase and
           fragile histidinetriad fusion protein NitFhit protein.
          Length = 440

 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 65/259 (25%), Positives = 108/259 (41%), Gaps = 9/259 (3%)
 Frame = -3

Query: 783 EAIFTKIEKIINTAASEGVQIICLEETWSMPFFLCTREKEKWDEFAESATEGPSVIFLKD 604
           E  F   + +I  A  +  +++ L E +    F+   + E+ D     AT+   +   ++
Sbjct: 29  EKNFQAAKNMIERAGEKKCEMVFLPECFD---FIGLNKNEQID--LAMATDCEYMEKYRE 83

Query: 603 LARKYGLVI-VSPILEKD--DVGTWWNTAVVIDEEGNVLGKHRKNHL-----PSVGSFSE 448
           LARK+ + + +  +  KD  D    WNT ++ID +G    ++ K HL     P      E
Sbjct: 84  LARKHNIWLSLGGLHHKDPSDAAHPWNTHLIIDSDGVTRAEYNKLHLFDLEIPGKVRLME 143

Query: 447 TPYYAPGNMGHPVFDTKYAKIAVNICYG-RHQALNWLMLGLNGAEIVFNPSATVAEFGES 271
           + +   G    P  DT   ++ ++ICY  R   L+ L     GA+++  PSA     G +
Sbjct: 144 SEFSKAGTEMIPPVDTPIGRLGLSICYDVRFPELS-LWNRKRGAQLLSFPSAFTLNTGLA 202

Query: 270 FWNIEARNAAIANGYFTCSINRVGTETFNSTSGGTIERTYYGSSYVTAPNGCRTPALSRL 91
            W    R  AI N  +  +  + G            +R  YG S V  P G      S  
Sbjct: 203 HWETLLRARAIENQCYVVAAAQTGAH--------NPKRQSYGHSMVVDPWGAVVAQCSE- 253

Query: 90  RDGLMIVEIDLNLNRQVRD 34
           R  +   EIDL+    +R+
Sbjct: 254 RVDMCFAEIDLSYVDTLRE 272


>Z35604-6|CAA84681.1|  305|Caenorhabditis elegans Hypothetical
           protein ZK1058.6 protein.
          Length = 305

 Score = 35.9 bits (79), Expect = 0.037
 Identities = 47/177 (26%), Positives = 74/177 (41%), Gaps = 14/177 (7%)
 Frame = -3

Query: 786 REAIFTKIEKIINTAASEGVQIICLEET-------W-SMPFFLCTREKEKWDEFA---ES 640
           + A   K++K +  AA  G +++   E        W S    + TR  E   EF    E+
Sbjct: 16  KPATLEKVKKNVEEAAGNGAELVLFPEAFIGGYPKWNSFGITMGTRTPEGRKEFKRYFEN 75

Query: 639 ATE--GPSVIFLKDLARKYGLVIVSPILEKDDVGTWWNTAVVIDEEGNVLGKHRKNHLPS 466
           A E  G     ++ LA +  + IV  ++E++   T + +       G  LGKHRK  LP+
Sbjct: 76  AIEENGEESKLIESLAAQNNIHIVIGVVERE-ASTLYCSVFFYSPSG-YLGKHRKL-LPT 132

Query: 465 VGSFSETPYYAPGNMGH-PVFDTKYAKIAVNICYGRHQALNWLMLGLNGAEIVFNPS 298
                E   +  G+    PVF T   KI   IC+  +  L  + L     +I   P+
Sbjct: 133 A---LERCVWGQGDGSTMPVFSTSVGKIGSAICWENYMPLYRMTLYSKEIQIYLAPT 186


>AC084155-7|AAG23366.3| 1061|Caenorhabditis elegans Hypothetical
           protein Y45G5AM.2 protein.
          Length = 1061

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 15/44 (34%), Positives = 27/44 (61%)
 Frame = -3

Query: 780 AIFTKIEKIINTAASEGVQIICLEETWSMPFFLCTREKEKWDEF 649
           +I  +I+KI NT   +G++   L ++ ++  FLC  EKE+ D +
Sbjct: 756 SIMERIKKIKNTDQLKGMRASNLRDSIAIVEFLCKFEKERRDGY 799


>U28409-4|AAC46590.2|  394|Caenorhabditis elegans Saposin-like
           protein family protein11 protein.
          Length = 394

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 23/62 (37%), Positives = 29/62 (46%)
 Frame = +2

Query: 446 VSLKLPTLGR*FFRCLPKTLPSSSITTAVFHHVPTSSFSNIGDTITNPYFLAKSFKKITL 625
           V  KLPT+       +PKTLP++ I   V    PT     I  TI  P  + K+    TL
Sbjct: 221 VPTKLPTVE--VPDTIPKTLPTTKIPDIVPITSPTVKIPQIIPTIKIPDIIPKNLS--TL 276

Query: 626 GP 631
           GP
Sbjct: 277 GP 278


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,173,883
Number of Sequences: 27780
Number of extensions: 494023
Number of successful extensions: 1237
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1233
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)