Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L10
         (830 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...   107   3e-24
SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.81 
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    28   1.4  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    28   1.9  
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp...    28   1.9  
SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux transporte...    27   2.5  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    26   5.7  
SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransfer...    26   7.5  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   10.0 
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    25   10.0 
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    25   10.0 

>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score =  107 bits (256), Expect = 3e-24
 Identities = 48/102 (47%), Positives = 66/102 (64%), Gaps = 2/102 (1%)
 Frame = -1

Query: 560 HPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRW 381
           HP  +FF L+FR  AI+ YIL  +F+ SF+  F+++  LL+ D WTVKN+SGRLLVGLRW
Sbjct: 47  HPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIFTLLAVDLWTVKNVSGRLLVGLRW 106

Query: 380 WNYVDDNGKSHWVFEARQSRVNRN--ESRLFWMGLTLCPLVW 261
            N    +G+S W+FE+      RN  + + FW  L L P +W
Sbjct: 107 RNETGVDGESIWIFESADPSRPRNAVDQKTFWYALYLYPFIW 148


>SPAC17G6.03 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 635

 Score = 29.1 bits (62), Expect = 0.81
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -2

Query: 148 FGAKESLKSATTEFMKQQIFQNAPAFMFSQPTPPNAGNTGV 26
           F + +S KSA+  F +  I  N   FMF   T  ++ NT +
Sbjct: 334 FSSLQSAKSASVSFSRSYIDWNPEGFMFHSKTKKSSFNTSL 374


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 95  DIPKRTCLYVLATHAAQRWQHWCRLNKIXR 6
           D+P+ TCL  +++H   R Q   RL +I R
Sbjct: 625 DLPEATCLIQISSHYGSRRQEAQRLGRILR 654


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = -2

Query: 802 CDLXNFQDYLLFLYNSICLTAVEIIDQYLSTYSD 701
           CDL +  ++LL+L NS  +T    +D   + Y+D
Sbjct: 328 CDLYSLSNFLLYLENSCVITYDVSLDCSFNEYND 361


>SPBC3B9.15c |scp1||sterol regulatory element binding protein
           Scp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1086

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/63 (30%), Positives = 29/63 (46%)
 Frame = -1

Query: 566 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGL 387
           FV+P +  F L   CS ++ ++L G F   F+A   + I  L    +   N S R     
Sbjct: 358 FVYPLVQEFCLFLACSFVVSFLLHGSF---FLAVLSVDIRRLELQDFLDSNSSNR---NS 411

Query: 386 RWW 378
           +WW
Sbjct: 412 KWW 414


>SPBC12C2.13c |fnx1|SPBC21D10.04c|MFS multidrug efflux
           transporter|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 531

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 5/54 (9%)
 Frame = -1

Query: 554 YIVFFHLVFRCSAIIVYILCG-----WFSDSFIASFVLVILLLSADFWTVKNIS 408
           Y+  F LV   +A++V    G     W S   I   V  +L+L A +W  KNI+
Sbjct: 225 YLGSFLLVTGITALVVTFNMGGDAFPWVSPVIITLLVSSVLILFAFYWVEKNIA 278


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1208

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = +1

Query: 745  LNILNYIGIVGNPENSKGHIQSKSL 819
            L +L  IGI  +P+ SK HI+ KSL
Sbjct: 1145 LRMLQKIGISPDPDLSKKHIKLKSL 1169


>SPAC10F6.12c |mam4||protein-S isoprenylcysteine O-methyltransferase
           Mam4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 236

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = -1

Query: 509 VYILCGWFSDSFIASFVLVILLLSADFWTVKNISGRLLVGLRWWNYVDDNGKSHWV 342
           V+I+ G+    F A   L  LL   +F+      G  L    W +++ +NGK++W+
Sbjct: 30  VWIIYGYSIGGFFAFLSLFHLL---EFYITARFQGSQL---SWDSFILNNGKAYWL 79


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -1

Query: 566 FVHPYIVFFHLVFRCSAIIVYILCGWFSDSFIASFVLVI 450
           F+HP+      +FRC  +  + L  + S SF  SF+  +
Sbjct: 101 FLHPFTGSELSLFRCLLLFFFFLLFFLSFSFSFSFLFFL 139


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 435 CRQQ*ND*YEACNE*VGEPPTQDVHNYRRASEHQVEEHYV 554
           CR++    Y  C++  G P  Q   NY     H  ++HY+
Sbjct: 264 CREKHERCY-ICDQVAGRPTHQYFKNYDSLERHFEKDHYI 302


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +3

Query: 240 QNIKKSGPDQGAQRQAHPEQAALVPVDPALTGLEH 344
           +N K   P        HP+Q  + P DPA+    H
Sbjct: 242 KNNKDQKPKNHEAPHQHPQQKVVPPDDPAIVSHRH 276


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,398,845
Number of Sequences: 5004
Number of extensions: 69747
Number of successful extensions: 200
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 199
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)