Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L09
         (812 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8A8H3 Cluster: Outer membrane protein, OmpA family; n=...    33   6.5  
UniRef50_A0DQH4 Cluster: Chromosome undetermined scaffold_6, who...    33   6.5  
UniRef50_A0D345 Cluster: Chromosome undetermined scaffold_36, wh...    33   8.6  

>UniRef50_Q8A8H3 Cluster: Outer membrane protein, OmpA family; n=7;
           Bacteria|Rep: Outer membrane protein, OmpA family -
           Bacteroides thetaiotaomicron
          Length = 266

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 15/40 (37%), Positives = 25/40 (62%)
 Frame = -3

Query: 162 ICVNDLIKYYYISIVGKNLILSKWKVNPLCYXLTTFDSFC 43
           +CV +L+KYY+I++  K+ I++K K   L   +T   S C
Sbjct: 9   LCVVNLLKYYFINLFKKHCIMNKMKWMVLFMSITMIFSGC 48


>UniRef50_A0DQH4 Cluster: Chromosome undetermined scaffold_6, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_6,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 408

 Score = 33.5 bits (73), Expect = 6.5
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
 Frame = -3

Query: 198 NKLDLSILHXNCICVNDLIKYYYISIVGKNL-ILSKWKVNPLCYXLTTFDSFCYKILQKT 22
           NK   + LH  CIC N L+   +I   G N+  L   +++PL Y   +  + C+KIL  +
Sbjct: 309 NKDGQTPLHIACICNNALLVKLFIK-NGSNIEALDNKQLSPLYYSFKSNSNDCFKILLNS 367

Query: 21  SLK 13
             K
Sbjct: 368 KAK 370


>UniRef50_A0D345 Cluster: Chromosome undetermined scaffold_36,
          whole genome shotgun sequence; n=1; Paramecium
          tetraurelia|Rep: Chromosome undetermined scaffold_36,
          whole genome shotgun sequence - Paramecium tetraurelia
          Length = 148

 Score = 33.1 bits (72), Expect = 8.6
 Identities = 13/17 (76%), Positives = 15/17 (88%)
 Frame = -3

Query: 78 LCYXLTTFDSFCYKILQ 28
          LC+ LT+F SFCYKILQ
Sbjct: 7  LCFILTSFYSFCYKILQ 23


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 630,397,980
Number of Sequences: 1657284
Number of extensions: 10934109
Number of successful extensions: 29092
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 26518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28804
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 70377768045
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)