Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L09
         (812 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36.02c |||spermidine family transporter |Schizosaccharomyces...    29   1.0  
SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces pombe...    27   4.2  
SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   5.5  
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr...    26   5.5  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   9.7  

>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
 Frame = -3

Query: 129 ISIVGKNLILSKWKV---NPLCYXLTTFDSFCYKIL 31
           +S + KN +L   K+    P+C+ +T + SF Y IL
Sbjct: 348 LSDIAKNYLLVPMKLLFTEPICFLITLYSSFVYAIL 383


>SPBC887.19 |rft1||human RFT1 ortholog |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 527

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 15/52 (28%), Positives = 26/52 (50%)
 Frame = -2

Query: 502 KGKTSGVRRNVMV*VSGSCRLLTYICVYVCVRASVRGARTFRCIHYIYL*ST 347
           +  + G+R ++     GS R+LT+    + +R +   A  F  IH+  L ST
Sbjct: 9   QSSSKGLRSSIFF--QGSSRILTFFLNQLTIRLTSPSAYAFSSIHFEILQST 58


>SPBC1A4.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 700

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +2

Query: 716 YLNSLLXTHTLAGGSLRRHHGDELFVXDLAVA 811
           YLNSLL  H   G  L++ H   +    LAVA
Sbjct: 299 YLNSLLSVHEKDGVLLQKFHNSYVQYQKLAVA 330


>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.2 bits (55), Expect = 5.5
 Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
 Frame = -3

Query: 168 NCICVNDLIKYYYISIVGKNLILSKWKV--NPLCYXLTTFDSFCYKILQKTSLKINV 4
           N  C   L++YY I +  K  +L+ W++  NP+       D   +K+L+K +  + +
Sbjct: 544 NRFCFKQLLEYYDIYL--KFKLLADWRLLTNPVLQIQEISDYCHFKLLKKVNRNLQI 598


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 9.7
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 314 NVYSVSASSQPEATPRSLAPCTFINVINV*KNLTNSVKRIN 192
           N+Y       PE T +S+ PCT + ++ + + L    K IN
Sbjct: 132 NMYHNIRHLDPEKTKKSILPCTPLAIVKILEYLGVYNKIIN 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,722,844
Number of Sequences: 5004
Number of extensions: 49538
Number of successful extensions: 119
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 396433620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)