Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L08
         (766 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241...    29   4.1  
11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644           28   7.1  
06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699     28   9.4  

>02_03_0049 +
           14421408-14421942,14421988-14422842,14423847-14424151,
           14424469-14424984
          Length = 736

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 15/41 (36%), Positives = 22/41 (53%)
 Frame = +1

Query: 10  NTHDLPSTK*ISYKTYCSNISLKQTIK*CV*IRCTSSTCSI 132
           N   LP+TK +    +CSNI L +  +    + C + TCSI
Sbjct: 208 NKRPLPTTKVVKLTEHCSNIILHKLPEKKKDLGCPTITCSI 248


>11_02_0113 + 8453628-8453820,8453970-8454941,8455031-8455644
          Length = 592

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +1

Query: 10  NTHDLPSTK*ISYKTYCSNISLKQTIK*CV*IRCTSSTCSI 132
           N   LP+T+ +    +CSN+ L + ++     RC + TCSI
Sbjct: 418 NKRLLPTTEVVKLTEHCSNLILHKLLEKKKDPRCPTITCSI 458


>06_03_0546 + 21988896-21989009,21989039-21989422,21989475-21989699
          Length = 240

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = -3

Query: 200 SYGSKVFFFNIRMDEKVNFYPTIIEQVDD 114
           +YG ++FF  +R D+K  + PT +  +DD
Sbjct: 163 AYGHRLFFAEVRKDKK-RYIPTCLWSLDD 190


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,296,296
Number of Sequences: 37544
Number of extensions: 283358
Number of successful extensions: 546
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 546
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)