Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L08
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical ...    29   3.6  
U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical pr...    29   4.8  
AC006768-6|AAO25976.1|  305|Caenorhabditis elegans Hypothetical ...    28   6.3  
AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical ...    28   8.4  

>Z50875-1|CAA90776.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 669 KIYLKKLFMLFKEQSSTHKYVIIFC 595
           K +L +LF+ +KEQS TH   II C
Sbjct: 469 KGFLTELFLKWKEQSCTHYVSIILC 493


>AL021180-3|CAA15982.1| 1872|Caenorhabditis elegans Hypothetical
           protein T08A11.1 protein.
          Length = 1872

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 669 KIYLKKLFMLFKEQSSTHKYVIIFC 595
           K +L +LF+ +KEQS TH   II C
Sbjct: 469 KGFLTELFLKWKEQSCTHYVSIILC 493


>U42844-8|AAB53820.1|  400|Caenorhabditis elegans Hypothetical
           protein C08A9.8 protein.
          Length = 400

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 17/55 (30%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 570 TYNNLPKL-EEKKPNTTNESINCFKTPLVLKMICICLHFYSNNIHDNYSELKSLL 409
           +Y+N  K+   KK      +I+CFK      +   CL FY++ +H N ++L  +L
Sbjct: 109 SYSNKYKMFSRKKIYRKFLNIHCFKFHKFESLKAGCLFFYTDFLHFNSNDLHKML 163


>AC006768-6|AAO25976.1|  305|Caenorhabditis elegans Hypothetical
           protein Y45G12B.1b protein.
          Length = 305

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = +3

Query: 114 IIDLFDYCRVKIDFFIHSNIKK 179
           I DLF+   VKIDFF   N KK
Sbjct: 280 INDLFELLSVKIDFFFRENQKK 301


>AL032643-2|CAA21661.2|  404|Caenorhabditis elegans Hypothetical
           protein Y54E5A.3 protein.
          Length = 404

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -1

Query: 718 LIICLLTSTFQIFYRQKNLSEKIIYAIQGTVFYPQVCYYFLFLQILNKLYVQ*SSKTRR 542
           LI+       +I +    + EK+  AIQ TVFY  +     FL ++  + +    KTRR
Sbjct: 336 LILAKERKKVRITFHNLKVDEKVS-AIQNTVFYWALAIAAFFLLLVTAVILMHREKTRR 393


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,719,897
Number of Sequences: 27780
Number of extensions: 344668
Number of successful extensions: 780
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 765
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 780
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)