Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L06
         (740 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    31   0.23 
SPAC22F8.12c |shf1||small histone ubiquitination factor Shf1|Sch...    28   1.2  
SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr 1...    28   1.6  
SPAC57A10.11c |tim40||TIM22 inner membrane protein import comple...    27   2.8  
SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein 4|Schizosacc...    27   2.8  
SPCPJ732.01 |vps5||retromer complex subunit Vps5|Schizosaccharom...    27   3.7  
SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces pomb...    26   4.9  
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ...    26   6.5  

>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = -2

Query: 718 LQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 557
           LQQ+Q   ++++ AQ++  P    P    P H   +   + KTTP+ + + PS+
Sbjct: 303 LQQRQMQMQQQQKAQQQQSPKAQQP----PAHLVQSAPVQRKTTPKIQRLPPSS 352


>SPAC22F8.12c |shf1||small histone ubiquitination factor
           Shf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 165

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 15/52 (28%), Positives = 22/52 (42%)
 Frame = -2

Query: 721 SLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 566
           S Q   Q  +  R +      S  S EHNSP H    ++N  + +  + S D
Sbjct: 37  SRQSYHQRTKTPRSSYDSPSSSTNSKEHNSPYHYRVPSNNSTRASFGAASTD 88


>SPAC6G9.01c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 95

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = -2

Query: 721 SLQQQQQADREERGAQRKAEPSRPSPEHN 635
           S   + +A   ++GA+ K+ PSRP P +N
Sbjct: 19  SNDSKSEAKAPKKGAKTKSTPSRPKPTNN 47


>SPAC57A10.11c |tim40||TIM22 inner membrane protein import complex
           subunit Tim40|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 313

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -2

Query: 718 LQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSN 602
           + Q    + EE  A+   +PS  S E+N PQ   S  ++
Sbjct: 250 IYQDMVGESEEEDAETNEKPSTTSDENNQPQSPPSDNAS 288


>SPAC29A4.16 |hal4|sat4, ppk10|halotolerence protein
           4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = -2

Query: 721 SLQQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVKTTP 584
           SLQ QQ   +    ++     + P P +N  +H +ST++     +P
Sbjct: 85  SLQSQQPLSKPVVSSKPNQTTAMPPPSNNPSRHVSSTSNKPAAVSP 130


>SPCPJ732.01 |vps5||retromer complex subunit
           Vps5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 664 EPSRPSPEHNSPQHSASTTSNEVKTTPESKSVD 566
           EPS    E  SP   AS     + T+P  +SV+
Sbjct: 31  EPSAEGVEEESPNVQASPPKTHIYTSPRKRSVN 63


>SPBC2D10.12 |rhp23||Rad23 homolog Rhp23|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 368

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = -2

Query: 658 SRPSPEHNSPQHSASTTSNEVKTTPESKSVDPSN 557
           SRP    ++P+ +AS   N   + PE K   PS+
Sbjct: 73  SRPKTSTSTPKSAASPAPNPPASVPEKKVEAPSS 106


>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 791

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = -2

Query: 661 PSRPSPEHNS----PQHSASTTSNEVKTTPESKSV 569
           PS+P+P + S    PQ S ++ ++   TTP+S SV
Sbjct: 450 PSKPAPVNASRPMMPQQSNNSEASIPSTTPQSPSV 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,178,370
Number of Sequences: 5004
Number of extensions: 35455
Number of successful extensions: 117
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)