Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_pT_L06
         (740 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        26   0.43 
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    24   1.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.7  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 25.8 bits (54), Expect = 0.43
 Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
 Frame = -2

Query: 652 PSPEHNSPQHSAS--TTSNEVKTT 587
           PSP  +SPQHS S  +TS   +TT
Sbjct: 62  PSPTGSSPQHSGSSASTSPAARTT 85


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 739 HLAXVTSLQQQQQADREERGAQRKAE 662
           H   VTS QQQQQ  ++++  Q++ +
Sbjct: 82  HSDRVTSQQQQQQQQQQQQDQQQQQQ 107


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -2

Query: 718 LQQQQQADREERGAQRKAEPS 656
           L+  + +D+EER AQ+  +PS
Sbjct: 344 LRMSRPSDKEEREAQKSQKPS 364


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 9/41 (21%), Positives = 18/41 (43%)
 Frame = -2

Query: 715  QQQQQADREERGAQRKAEPSRPSPEHNSPQHSASTTSNEVK 593
            QQQQQ  ++ +   ++ +  +P P+    Q        + K
Sbjct: 1508 QQQQQQQQQPQQQSQQPQQQQPQPQQQQQQQQQQQPQQQQK 1548



 Score = 23.0 bits (47), Expect = 3.0
 Identities = 8/30 (26%), Positives = 16/30 (53%)
 Frame = -2

Query: 715  QQQQQADREERGAQRKAEPSRPSPEHNSPQ 626
            QQQQ   ++++  Q++ +     P+   PQ
Sbjct: 1501 QQQQPQQQQQQQQQQQPQQQSQQPQQQQPQ 1530


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 22.2 bits (45), Expect = 5.3
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
 Frame = -2

Query: 715 QQQQQADREERGAQRKAEPSRPSPEHNSPQHS------ASTTSNEVKTTPESKS 572
           QQQQQ  ++++  Q++   S      NSP  S      A+T+S      P S +
Sbjct: 795 QQQQQQQQQQQQQQQQQSSSDYLMVGNSPASSPRYLSAAATSSTSTSPRPASST 848


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 145,616
Number of Sequences: 438
Number of extensions: 2524
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23144850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)